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BioAssay: AID 920

Primary cell-based high throughput screening assay to measure STAT1 inhibition

The signal transducer and activator of transcription (STAT) family of transcription factors transduce signals from a variety of extracellular stimuli and are important mediators of inflammation, cell survival, differentiation, and proliferation (1, 2). STATs are activated in response to growth factors, cytokines, and G-CSF binding to cell surface receptor tyrosine kinases (1-3). In resting cells more ..
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 Tested Compounds
 Tested Compounds
All(195983)
 
 
Active(695)
 
 
Inactive(195289)
 
 
 Tested Substances
 Tested Substances
All(196012)
 
 
Active(695)
 
 
Inactive(195317)
 
 
AID: 920
Data Source: The Scripps Research Institute Molecular Screening Center (STAT1_INH_LUMI_1536_%INH)
BioAssay Type: Primary, Primary Screening, Single Concentration Activity Observed
Depositor Category: NIH Molecular Libraries Screening Center Network
BioAssay Version:
Deposit Date: 2007-12-19
Modify Date: 2008-09-11

Data Table ( Complete ):           View Active Data    View All Data
Target
BioActive Compounds: 695
Related Experiments
Show more
AIDNameTypeProbeComment
1263Confirmation cell-based high throughput screening assay to measure STAT1 inhibitionScreening depositor-specified cross reference
1265Confirmation cell-based high throughput screening assay to measure STAT3 inhibitionScreening depositor-specified cross reference
1303Counterscreen assay for STAT1 inhibitors: Cell-based high throughput assay to measure NF-kappaB inhibitionScreening depositor-specified cross reference
1308Counterscreen assay for STAT3 inhibitors: Cell-based high throughput assay to measure NF-kappaB inhibition.Screening depositor-specified cross reference
1310Counterscreen assay for STAT1 inhibitors: Cell-based high throughput assay to measure STAT3 inhibitionScreening depositor-specified cross reference
1317Counterscreen assay for STAT3 inhibitors: Cell-based high throughput assay to measure STAT1 inhibitionScreening depositor-specified cross reference
1396Dose response cell-based assay to measure STAT1 inhibitionConfirmatory depositor-specified cross reference
1399Dose response cell-based assay to measure STAT3 inhibitionConfirmatory depositor-specified cross reference
1409Dose response counterscreen for STAT1 inhibitors: cell-based high throughput assay to measure STAT3 inhibitionConfirmatory depositor-specified cross reference
1411Dose response counterscreen assay for STAT3 inhibitors: cell-based high throughput assay to measure STAT1 inhibitionConfirmatory depositor-specified cross reference
1803Summary of probe development efforts to identify inhibitors of signal transducer and activator of transcription 1 (STAT1)Summary depositor-specified cross reference
1806Summary of probe development efforts to identify inhibitors of signal transducer and activator of transcription 3 (STAT3)Summary2 depositor-specified cross reference
2078Late stage results from the probe development efforts to identify inhibitors of signal transducer and activator of transcription 3 (STAT3).Screening depositor-specified cross reference
2771Late stage counterscreen results from the probe development effort to identify STAT1 inhibitors: luminescence-based cell-based dose response assay for STAT3 inhibitorsConfirmatory depositor-specified cross reference
2772Late stage results from the probe development effort to identify STAT1 inhibitors: luminescence-based cell-based dose response assay for STAT1 inhibitorsConfirmatory depositor-specified cross reference
449758Late stage assay provider counterscreen results from the probe development effort to identify STAT1 inhibitors: fluorescence-based cell-based quantitative PCR assay to identify inhibitors of IRF-1 gene expressionOther depositor-specified cross reference
862Primary cell-based high throughput screening assay to measure STAT3 inhibitionScreening same project related to Summary assay
862Primary cell-based high throughput screening assay to measure STAT3 inhibitionScreening same project related to Summary assay
Description:
Source (MLSCN Center Name): The Scripps Research Institute Molecular Screening Center
Center Affiliation: The Scripps Research Institute (TSRI)
Assay Provider: David Frank
Network: Molecular Library Screening Center Network (MLSCN)
Grant Proposal Number: 1 X01 MH079826-01
Grant Proposal PI: David Frank

External Assay ID: STAT1_INH_LUMI_1536_%INH

Name: Primary cell-based high throughput screening assay to identify inhibitors of STAT1

Description:

The signal transducer and activator of transcription (STAT) family of transcription factors transduce signals from a variety of extracellular stimuli and are important mediators of inflammation, cell survival, differentiation, and proliferation (1, 2). STATs are activated in response to growth factors, cytokines, and G-CSF binding to cell surface receptor tyrosine kinases (1-3). In resting cells STATs are inactive in the cytoplasm. In response to stimuli, STATs are phosphorylated by the Janus-activated kinases (Jaks), which induces STAT dimerization and nuclear translocation, where STATs bind to specific enhancer elements in target genes (2). Although structurally similar, members of the STAT family (STATs 1, 2, 3, 4, 5a, 5b, and 6) possess diverse biological roles (2). For example, STAT1 activation is pro-inflammatory and anti-proliferative, while STAT3 activation is anti-inflammatory and pro-apoptotic (2). STAT1 is largely responsible for mediating the effects of IFN-gamma, while STAT3 is predominantly involved in IL-6 signaling (4). STAT1 induces expression of genes that inhibit the cell cycle, and thus STAT1 is considered to have tumor suppressor properties (5). Currently available STAT1 modulators mediate modest effects on STAT-induced transcription, act indirectly by targeting JAK or other kinases activities, or are associated with adverse hematologic or gastrointestinal side effects (6, 7). The liabilities of the current state of the art for STAT1 modulators necessitate the discovery of higher affinity probes. Due to the diverse roles and potent phenotypes associated with STAT signaling, the identification of selective modulators of STAT1 activity may lead to pharmacological tools for cancer, wound healing, and inflammatory diseases.


References:

1. Alvarez JV, Febbo PG, Ramaswamy S, Loda M, Richardson A, Frank DA. Identification of a genetic signature of activated signal transducer and activator of transcription 3 in human tumors. Cancer Res. 2005 Jun 15;65(12):5054-62.
2. Schindler C, Levy DE, Decker T. JAK-STAT signaling: from interferons to cytokines. J Biol Chem. 2007 Jul 13;282(28):20059-63.
3. Germain D, Frank DA. Targeting the cytoplasmic and nuclear functions of signal transducers and activators of transcription 3 for cancer therapy. Clin Cancer Res. 2007 Oct 1;13(19):5665-9.
4. Levy DE, Darnell JE Jr. Stats: transcriptional control and biological impact. Nat Rev Mol Cell Biol. 2002 Sep;3(9):651-62.
5. Battle TE, Wierda WG, Rassenti LZ, Zahrieh D, Neuberg D, Kipps TJ, Frank DA. In vivo activation of signal transducer and activator of transcription 1 after CD154 gene therapy for chronic lymphocytic leukemia is associated with clinical and immunologic response. Clin Cancer Res. 2003 Jun;9(6):2166-72.
6. Lynch RA, Etchin J, Battle TE, Frank DA. A small-molecule enhancer of signal transducer and activator of transcription 1 transcriptional activity accentuates the antiproliferative effects of IFN-gamma in human cancer cells. Cancer Res. 2007 Feb 1;67(3):1254-61.
7. Johnson S, Smith AG, Loffler H, Osby E, Juliusson G, Emmerich B, Wyld PJ, Hiddemann W. Multicentre prospective randomised trial of fludarabine versus cyclophosphamide, doxorubicin, and prednisone (CAP) for treatment of advanced-stage chronic lymphocytic leukaemia. The French Cooperative Group on CLL. Lancet. 1996 May 25;347(9013):1432-8.

Keywords:

STAT1, signal transducer and activator of transcription 1, transcription factor, Scripps, Scripps Florida, Molecular Library Screening Center Network, MLSCN, HTS, assay, inhibition, antagonist, primary, primary screen, luciferase, luminescence, reporter, 1536.
Protocol
Assay Overview:
Inhibition of STAT1 activity was measured using a murine NIH 3T3 fibroblast cell line cell line that stably expresses a STAT1::luciferase construct. In this primary assay approximately 195,000 test compounds from the MLSCN library were screened for their ability to prevent or reduce IFN-gamma-mediated STAT1::luciferase reporter activity. Cells were exposed to test compounds from the MLSCN library, followed by treatment with IFN-gamma. Changes in STAT1::luciferase activity were monitored by measuring luminescence. As designed, a STAT1 antagonist will block IFN-gamma-mediated STAT1 transcription, thus preventing or reducing the activation of the luciferase reporter gene, and decreasing luminescence.
Protocol Summary:
This STAT1 antagonist assay was run simultaneously in the same plates as the STAT1 potentiator campaign. The cells were grown in T-175 flasks in Dulbecco's Modified Eagle's Media (DMEM) supplemented with 10% v/v fetal bovine serum and antibiotics (50 ug/mL each of penicillin and streptomycin) at 37 degrees C in an atmosphere of 5% CO2 and 95% relative humidity (RH). Cells were harvested by trypsinization between 50% to 70% confluency.
Cells were resuspended in growth medium, prepared in DMEM without phenol red, at a density of 1.88 million cells/mL and filtered through a 0.7 micron filter. Next, 4 ul of well-mixed cell suspension (7,520 cells per well) were dispensed into each well of 1536-well plates. The assay was started by immediately dispensing 28 nL of test compound (5.5 uM final nominal concentration) in DMSO to sample wells, while control wells received nifuroxazide (final nominal IC100 concentration of 300 uM, set as 100% inhibition) in DMSO, or DMSO alone (0.6% final concentration). The plates were then incubated for 1 hour at 37 degrees C (5% CO2, 95% RH). Next, 1 ul of human recombinant IFN-gamma (final nominal EC80 concentration of 3.0 ng/mL, set as 100% activation) was dispensed into sample and control wells. Plates were then incubated for 4 hours at 37 degrees C (5% CO2, 95% RH). The assay was stopped by dispensing 5 ul of SteadyLite HTS luciferase substrate at room temperature to each well, followed by incubation at room temperature for 15 minutes. Luminescence was measured on the ViewLux plate reader.
The percent inhibition was defined using the following mathematical formula:
% Inhibition = 100*[1 - ((Test_Compound - Median_High_Control) / (Median_Low_Control - Median_High_Control))]
Where:
Test_Compound is defined as the luminescence value of IFN-gamma-treated wells containing test compound
Median_High_Control is defined as the median luminescence of IFN-gamma-treated control wells containing nifuroxazide
Median_Low_Control is defined as the median luminescence of IFN-gamma-treated control wells containing DMSO
A mathematical algorithm was used to determine nominally inhibitory compounds in the primary screen. Two values were calculated: (1) the average percent inhibition of all compounds tested, and (2) three times their standard deviation. The sum of these two values was used as a cutoff parameter (35.13%), i.e. any compound that exhibited greater % inhibition than the cutoff parameter was declared active. The reported Pubchem_Activity_Score has been normalized to 100% of the highest observed primary inhibition. Compounds with negative % inhibition values are reported to PubChem as having an activity score of zero.
List of Reagents:
Dulbecco's Modified Eagle's Media I (Invitrogen, part# 11965-092)
Dulbecco's Modified Eagle's Media, no Phenol Red (Invitrogen, part# 21063-029)
Fetal Bovine Serum (Hyclone, part# SH30088-03)
100X Penicillin-Streptomycin-Neomycin mix (Invitrogen, part# 15640-055).
Recombinant human IFN-gamma (R&D Systems, part# 485-MI)
Nifuroxazide (Sigma-Aldrich, part# N 2641)
SteadyLite HTS Assay Kit (PerkinElmer, part# 6016989)
Comment
All data were normalized on a per-plate basis. Each plate was normalized using same plate controls. The approximate nifuroxazide IC50 for this assay was 75 micromolar. Possible artifacts of this assay can include, but are not limited to dust or lint located in or on wells of the plate, compounds that non-specifically modulate STAT1 or luciferase activity, and compounds that quench or enhance luminescence within the well. All test compound concentrations reported are nominal; the specific test concentration for a particular compound may vary based upon the actual sample provided by the MLSMR.
Categorized Comment - additional comments and annotations
From PubChem:
Assay Format: Cell-based
Assay Cell Type: NIH 3T3
Result Definitions
TIDNameDescriptionHistogramTypeUnit
OutcomeThe BioAssay activity outcomeOutcome
ScoreThe BioAssay activity ranking scoreInteger
1Inhibition (5.5μM**)Normalized percent inhibition of the primary screen at a compound concentration of 5.5 micromolar.Float%

** Test Concentration.

Data Table (Concise)
Data Table ( Complete ):     View Active Data    View All Data
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