Orcinol Secondary Screening for Inhibitors of Bacterial Capsule Biogenesis (2)
Assay Rationale and Summary: Uropathogenic Escherichia coli (UPEC) is the leading cause of community-acquired urinary tract infections (UTIs). Over 100 million UTIs occur annually throughout the world, including more than 7 million cases in U.S. adolescents and adults. UTIs in younger children are associated with greater risk of morbidity and mortality than in older children and adults. more ..
BioActive Compound: 1
Southern Research's Specialized Biocontainment Screening Center (SRSBSC)
Southern Research Institute (Birmingham, Alabama)
NIH Molecular Libraries Probe Production Centers Network (MLPCN)
Assay Provider: Dr. Patrick Seed, Duke University, Durham, NC
Award: 1 R03 MH090791-01
Assay Rationale and Summary: Uropathogenic Escherichia coli (UPEC) is the leading cause of community-acquired urinary tract infections (UTIs). Over 100 million UTIs occur annually throughout the world, including more than 7 million cases in U.S. adolescents and adults. UTIs in younger children are associated with greater risk of morbidity and mortality than in older children and adults. Antimicrobial resistance among UPEC is on the rise, driving efforts to elucidate vulnerable targets in the molecular pathogenesis of infection. New insights into the roles of K capsules in UPEC virulence during UTI make capsules an attractive target.
During UTI, UPEC lives in intracellular and extracellular locales. UPEC adheres to the apical bladder epithelium and then invades this layer of cells. Within the bladder epithelium, UPEC typically replicates in a biofilm-like state called intracellular bacterial communities (IBC). After maturation of IBCs, UPEC disperses away from the IBC and exits the infected cells. Extracellular UPEC must then re-adhere, initiating the invasion and intracellular replication phases again. Past studies have revealed bacteria encased in the IBC within a complex matrix of fibrous protein assemblies and polysaccharides. Prior studies have also shown that disruption of the IBC pathway aborts experimental UTI, highlighting the importance of this intracellular lifecycle. A detailed study of urine samples from women with acute UTI demonstrated IBC in shed bladder epithelial cell, showing that the pathway is conserved in humans. Investigations have shown that K capsule contributes to multiple aspects of pathogenesis, including IBC formation.
Of the different K types, the Group 2 and Group 3 capsules are most prevalent among UPEC isolates, with K1 and K5 being leading types. Although the capsules have different compositions, they are synthesized, assembled, and exported by functionally homologous factors, leading us to hypothesize that we can develop small molecular inhibitors of K-type encapsulation that target the most medically important K types. This secondary assay will identify the phenotypic specificity of hits from which we may determine the optimal targets for capsule biogenesis inhibition and develop analogues with pharmacologically optimized properties.
Secondary Assay Protocol: The biochemical determination of cell-surface associated capsule was performed using UTI89 or the DeltakpsM mutant bacterial strains. The strains are grown grown with and without the test inhibitor (100 uM), were recovered by centrifugation, and the cell pellets were washed in PBS and resuspended in Tris buffer, pH5. Low pH released surface polysaccharide without lysing the bacteria. Released polysaccharide was harvested by separation from whole bacteria by centrifugation followed by deproteination with phenol/chloroform and precipitation with ethanol. The precipitated material was subjected to acid hydrolysis (pH 2 at 80 degrees C for 1 hr) and incubated with orcinol, which reacts with periodic intermediates to produce a violet color quantified at OD 572 nm. Inhibitors reducing or abrogating surface encapsulation will yield low orcinol levels similar to the capsule export control strain DeltakpsM. The positive control drug C7 was used in this screen.
Outcome: Percentage of capsule formation was calculated relative to the mean of the bacterial (no drug) control. Capsule formation at 100 uM was tested. Compounds that showed <50% capsule formation were considered Active.
Score: In this secondary assau using purified compounds, active compounds were scored on a scale of 81-100 based on thier ability to inhibit capsule formation. Compounds that were not confirmed as active were given the score 0.
Categorized Comment - additional comments and annotations
From BioAssay Depositor:
BAO: assay design: viability reporter: cell number
BAO: assay format: cell-based format
BAO: bioassay specification: assay biosafety level: BSL2
BAO: bioassay specification: assay measurement type: endpoint assay
BAO: bioassay specification: assay stage: secondary: selectivity
BAO: detection technology: spectrophotometry: absorbance
BAO: format detail: reagent: inducer: none
BAO: meta target detail: binding reporter specification: interaction: protein-drug
BAO: meta target: biological process target: biofilm formation
BAO: meta target: molecular target: protein target:enzyme
BAO: version: 1.4b1090
Data Table (Concise)