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BioAssay: AID 623894

SAR Analysis for the identification of inhibitors of the two-pore domain potassium channel KCNK9 - Selectivity assay against KCNK3: FluxOR Assay CRC 3

Name: SAR Analysis for the identification of inhibitors of the two-pore domain potassium channel KCNK9 - Selectivity assay against KCNK3: FluxOR Assay CRC 3 ..more
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 Tested Compounds
 Tested Compounds
All(25)
 
 
Active(22)
 
 
Inactive(3)
 
 
 Tested Substances
 Tested Substances
All(28)
 
 
Active(25)
 
 
Inactive(3)
 
 
AID: 623894
Data Source: Johns Hopkins Ion Channel Center (K9_Inh_SAR_KCNK3_CRC_3)
BioAssay Type: Confirmatory, Concentration-Response Relationship Observed
Depositor Category: NIH Molecular Libraries Probe Production Network
Deposit Date: 2012-03-27
Hold-until Date: 2013-03-27
Modify Date: 2013-03-27

Data Table ( Complete ):           Active    All
Target
BioActive Compounds: 22
Depositor Specified Assays
AIDNameTypeComment
488964Summary of probe development for inhibitors of the two-pore domain potassium channel KCNK9summarySummary of probe development for inhibitors of the two-pore domain potassium channel KCNK9
488922Primary cell-based screen for identification of compounds that inhibit the two-pore domain potassium channel KCNK9screeningPrimary cell-based screen for identification of compounds that inhibit the two-pore domain potassium channel KCNK9
492992Confirmatory screen for identification of compounds that inhibit the two-pore domain potassium channel (KCNK9)screeningConfirmatory screen for identification of compounds that inhibit the two-pore domain potassium channel (KCNK9)
588776SAR Analysis for the identification of selective inhibitors of the two-pore domain potassium channel KCNK9 in KCNK3 expressing cells: FluxOR Assay CRC 1confirmatory
Description:
Data Source: Johns Hopkins Ion Channel Center
BioAssay Type: Confirmatory, Concentration-Response Relationship Observed

Source (MLPCN Center Name): Johns Hopkins Ion Channel Center (JHICC)
Center Affiliation: Johns Hopkins University, School of Medicine
Screening Center PI: Min Li, Ph.D.
Assay Provider: Meng Wu, Ph.D., Johns Hopkins University, School of Medicine
Network: Molecular Libraries Probe Production Centers Network (MLPCN)
Grant Proposal Number: R03 MH090849-01
Grant Proposal PI: Meng Wu, Ph.D., Johns Hopkins University, School of Medicine
Assay Implementation: Melissa Miller, Shunyou Long M.S., David Meyers Ph.D., Owen McManus Ph.D.

Name: SAR Analysis for the identification of inhibitors of the two-pore domain potassium channel KCNK9 - Selectivity assay against KCNK3: FluxOR Assay CRC 3

Description:

The purpose of this assay is to assess the specificity of compounds identified as inhibitors of KCNK9. This specificity screen is to eliminate any compounds that interact with the two-pore domain potassium channel KCNK3. Compound inhibition of KCNK3 was tested in at least duplicate using a thallium sensitive dye.
Protocol
1. Cell culture: Cells are routinely cultured in Hams F12 medium, supplemented with 10% Fetal Bovine Serum (FBS), 50 IU/ml penicillin, 50ug/ml streptomycin, 400ug/ml hygromycin and 10 ug/mL Blasticidin S and 400 ug/mL hygromycin
2. Cell plating: Add 50 ul/well of 120,000 cells/ml re-suspended in Hams F12 medium with 10% FBS and 1ug/ul Tetracycline. .
4. Remove medium and add 25 ul/well of 1x FluxOR solution to cells
5. Incubate 90 minutes at room temperature (RT) in the dark
6. Prepare 7.5x compound plates and control plates on Cybi-Well system
7. Remove FluxOR dye solution and add 20 ul/well of assay buffer to cells
8. Add 4 ul of 7.5x compound stock into the cell plates via Cybi-Well system
9. Incubate all cell plates for 20 minutes at RT in the dark
10. Prepare 5x stimulus buffer containing 25 mM K2SO4 and 7 mM Tl2SO4
11. Load cell plates to Hamamatsu FDSS 6000 kinetic imaging plate reader
12. Measure fluorescence for 10 seconds at 1Hz to establish baseline
13. Add 6 ul/well of stimulus buffer onto cells and continue measuring fluorescence for 110 seconds
14. Calculate ratio readout as F(max-min)/F0
15. Calculate the average and standard deviation for negative and positive controls in each plate, as well as Z and Z' factors
16. IC50 and Hill Constant calculation from replicates was generated using Microcol Origin 6.0
17. Outcome assignment: If the test compound causes a maximum inhibition of KCNK3 greater than 30% in any concentration tested and a dose response curve is generated, the compound is considered to be active (outcome=2). If the test compound does not cause inhibition of KCNK3 at any concentration tested or a dose response is not generated, the compound is designated as inactive (outcome=1).
16. Score assignment: Compounds with an IC50 less than 1uM are given a score of 100, 1uM-5uM a score of 75, 5uM-10uM a score of 50, 10uM-20uM a score of 25 and any compound with an IC50 greater than 20uM or those that are designated inactive in the outcome are given a score of 0.

List of reagents
1. KCNK3 CHO cell line (provided by Doug Bayliss, UVA)
2. Hams F-12 Nutrient Mixture (1X), liquid w/L-Glut (Mediatech, Cat #10-080-CV)
3. Fetal Bovine Serum (Gibco, Cat #26140)
4. 100x Penicillin-Streptomycin (Mediatech, Cat #30-001-CI)
5. CellStripper (Mediatech, Cat #25-056-Cl)
6. Blasticidin S (Research Products Internationl Corp, Cat #B12150)
7. Hygromycin (Mediatech, Cat #30-240-CR)
8. HEPES (Sigma, Cat #H4034)
9. 10XHBSS (Invitrogen, Cat #14065056)
10. Tetracycline (Sigma, Cat #T7660)
11. FluxOR detection kit (Invitrogen, Cat #F10017)
12. Triple-layer flask (VWR, Cat #62407-082)
13. BD Biocoat 384-well plates (BD, Cat #354663 and Lot #7346273)
Comment
Data interpretation: If the compound is active in this assay, it is NOT likely that it is to be specific hits for KCNK9 target. Only the compounds, which are NOT active in this assay, will be further pursued for KCNK9 specific inhibitors.


Possible artifacts of this assay can include, but are not limited to: non-intended chemicals, or dust in or on wells of the microtiter plate, compounds that non-specifically modulate the cell host or the targeted activity, and compounds that quench or emit light or fluorescence within the well. All test compound concentrations reported are nominal; the specific concentration for a particular test compound may vary based upon the actual sample provided by the MLSMR.
Result Definitions
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TIDNameDescriptionHistogramTypeUnit
OutcomeThe BioAssay activity outcomeOutcome
ScoreThe BioAssay activity ranking scoreInteger
1IC50*IC50 (uM)FloatμM
2Ratio at 30uM (30μM**)Ratio for KCNK9 at the specified compound concentrationFloat
3SD at 30uMStandard Deviation of measurement of KCNK9 ratio at the specified concentrationFloat
4Ratio at 10uM (10μM**)Ratio for KCNK9 at the specified compound concentrationFloat
5SD at 10uMStandard Deviation of measurement of KCNK9 ratio at the specified concentrationFloat
6Ratio at 3.33uM (3.33μM**)Ratio for KCNK9 at the specified compound concentrationFloat
7SD at 3.33uMStandard Deviation of measurement of KCNK9 ratio at the specified concentrationFloat
8Ratio at 1.11uM (1.11μM**)Ratio for KCNK9 at the specified compound concentrationFloat
9SD at 1.11uMStandard Deviation of measurement of KCNK9 ratio at the specified concentrationFloat
10Ratio at 370nM (0.37μM**)Ratio for KCNK9 at the specified compound concentrationFloat
11SD at 370nMStandard Deviation of measurement of KCNK9 ratio at the specified concentrationFloat
12Ratio at 123nM (0.123μM**)Ratio for KCNK9 at the specified compound concentrationFloat
13SD at 123nMStandard Deviation of measurement of KCNK9 ratio at the specified concentrationFloat
14Ratio at 41.1nM (0.041μM**)Ratio for KCNK9 at the specified compound concentrationFloat
15SD at 41.1nMStandard Deviation of measurement of KCNK9 ratio at the specified concentrationFloat
16Ratio at 13.7nM (0.013μM**)Ratio for KCNK9 at the specified compound concentrationFloat
17SD at 13.7nMStandard Deviation of measurement of KCNK9 ratio at the specified concentrationFloat
18Ratio at 4.57nM (0.00457μM**)Ratio for KCNK9 at the specified compound concentrationFloat
19SD at 4.57nMStandard Deviation of measurement of KCNK9 ratio at the specified concentrationFloat
20Ratio at 1.52nM (0.00152μM**)Ratio for KCNK9 at the specified compound concentrationFloat
21SD at 1.52nMStandard Deviation of measurement of KCNK9 ratio at the specified concentrationFloat
22NNumber of replicates for KCNK9 ratio measurementsInteger
23Hill ConstantHill constant of fittingFloat

* Activity Concentration. ** Test Concentration.
Additional Information
Grant Number: 1 R03 MH090849-01

Data Table (Concise)
Classification
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