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BioAssay: AID 602472

Single concentration confirmation of uHTS hits for cystic fibrosis induced NFkb Inhibitors in a fluoresence assay

The inflammatory response in Cystic Fibrosis (CF) is a complex interplay between several factors. It has been suggested that pro-inflammatory cytokines are elevated in the epithelial lining fluid samples of CF patients(1). Conversely, expressions of anti-inflammatory cytokines are reduced(2). 90% of all CF deaths occurs from defective lung function. The activation of NFkB via toll-like receptors following bacterial infection is principally involved in the regulation of lung inflammation in CF(3,4) ..more
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 Tested Compounds
 Tested Compounds
All(1302)
 
 
Active(833)
 
 
Inactive(469)
 
 
 Tested Substances
 Tested Substances
All(1302)
 
 
Active(833)
 
 
Inactive(469)
 
 
AID: 602472
Data Source: Burnham Center for Chemical Genomics (SBCCG-A833-CF-PAF-Inh-CP-Assay)
BioAssay Type: Primary, Primary Screening, Single Concentration Activity Observed
Depositor Category: NIH Molecular Libraries Probe Production Network
Deposit Date: 2012-03-22

Data Table ( Complete ):           View Active Data    View All Data
Target
BioActive Compounds: 833
Related Experiments
AIDNameTypeComment
588850uHTS identification of cystic fibrosis induced NFkb Inhibitors in a fluoresence assayScreeningdepositor-specified cross reference
588858Summary assay for small molecule cystic fibrosis induced NFkb InhibitorsSummarydepositor-specified cross reference
602141uHTS determination of small molecule cytotoxicity in a fluorescence assay to identify cystic fibrosis induced NFkb InhibitorsScreeningsame project related to Summary assay
624343Dose Response confirmation of uHTS small molecule hits for cystic fibrosis induced NFkb Inhibitors in a PAF-induced IL8 counterscreenConfirmatorysame project related to Summary assay
624344Dose Response confirmation of uHTS small molecule hits for cystic fibrosis induced NFkb Inhibitors in a panel assayConfirmatorysame project related to Summary assay
624347Dose Response confirmation of uHTS small molecule hits for cystic fibrosis induced NFkb Inhibitors in a TNFa-induced IL8 counterscreenConfirmatorysame project related to Summary assay
651592SAR analysis of molecule cystic fibrosis induced NFkb Inhibitors in a panel assayConfirmatorysame project related to Summary assay
Description:
Data Source: Sanford-Burnham Center for Chemical Genomics (SBCCG)
Source Affiliation: Sanford-Burnham Medical Research Institute (SBMRI, San Diego CA)
Network: NIH Molecular Libraries Probe Production Centers Network (MLPCN)
Grant Number: IR21 NS061743-01
Assay Provider: Rangan Maitra, Ph.D., RTI International University

The inflammatory response in Cystic Fibrosis (CF) is a complex interplay between several factors. It has been suggested that pro-inflammatory cytokines are elevated in the epithelial lining fluid samples of CF patients(1). Conversely, expressions of anti-inflammatory cytokines are reduced(2). 90% of all CF deaths occurs from defective lung function. The activation of NFkB via toll-like receptors following bacterial infection is principally involved in the regulation of lung inflammation in CF(3,4)

This project proposes to develop and optimize a Pseudomonas aeruginosa filtrate (PAF)-induced NFkB-GFP reporter assay using immortalized CF airway epithelial cell line (KKLEB) and screen the MLPCN library for inhibitors of PAF-induced NFkB pathway and distinguish compounds that are inhibiting via the toll-like receptor NFkB pathway to treat lung inflammation in CF.

This purpose of this assay is to confirm hits from "uHTS identification of cystic fibrosis induced NFkb Inhibitors in a fluoresence assay." AID 588850.

REFERENCES
1. Bonfield, T.L., Konstan, M. W. & Berger, M. Altered respiratory epithelial cell cytokine production in cystic fibrosis. J Allergy Clin Immunol 104, 72-8 (1999).
2. Bonfield, T.L et al. Normal bronchial epithelial cells constitutively produce the anti-inflammatory cytokine interleukin-10, which is downregulated in cystic fibrosis. Am J Respir Cell Mol Biol 13, 257-61 (1995).
3. Zhang, Z., Louboutin, J.P., Weiner, D.J., Goldberg, J.B. & Wilson, J. M. Human airway epithelial cells sense Pseudomonas aeruginosa infection via recognition of flagellin by toll-like receptor 5. Infect Immunol 73, 7151-60 (2005).
4. Greene, C. M. et al. TLR-induced inflammation in cystic fibrosis and non-cystic fibrosis airway epithelial cells. J. Immunol 174, 1638-46 (2005).
Protocol
Assay Materials:
KKLEB-NFkB-GFP cells (Assay Provider)
Pseudomonas aeruginosa filtrate (PAF) (Assay Provider)
Fetal Bovine Serum (Hyclone SH30396.03)
Penicillin Streptomycin solution
L-glutamine (100X)
TrypLE (Invitrogen 12563)
DPBS without calcium and magnesium (1X)
Corning culture flasks
Black CellBind 1536-well plates (Corning 3833)
I. Cell Suspension
1- Dispense 3 uL/well of cells at 5X10;5 cells/mL to the whole plate (plate cells in 2% FBS assay media).
2- Spin down plates on Eppendorf centrifuge 5810 at 500 rpm for 1 minute.
II. Compound Addition:
3- Transfer test compounds to columns 5-48 and DMSO to columns 1-4 using the Labcyte ECHO 555.
4- Transfer volume of test compound and DMSO is 2.5nL of 10mM DPI reorder plate making 5uM compound concentration at 0.04% DMSO final.
5-Spin down plates on Vspin at 1000 rpm for 1 minute.
6-Put Kalypsys metal lids on plates, incubate plates at 37 degrees C with 5% CO2 for 2 hours.
III. Reagent Addition
7- Dispense 3 uL/well of serum free assay media to columns 1 and 2.
8- Dispense 3 uL/well of PAF (dilute in serum free assay media) to columns 3-48.
9- Spin down plates without lids on Vspin at 2000 rpm for 2 min
10- Put Kalypsys metal lids on plates, and incubate plates at 37 degrees C with 5% CO2 overnight.
IV. Reading plates:
11-Spin plates upside down with a container at 1000 rpm for 15 sec. Dab them with a tissue to dry them and Read immediately on envision for GFP fluorescence.
Comment
Compounds that demonstrated a %Activity_mean of >= 50% at 5 uM concentration are defined as actives in this assay.
To simplify the distinction between the inactives of the primary screen and of the confirmatory screening stage, the Tiered Activity Scoring System was developed and implemented. Its utilization for the assay is described below.
Activity Scoring
Activity scoring rules were devised to take into consideration compound efficacy, its potential interference with the assay and the screening stage that the data was obtained. Details of the Scoring System will be published elsewhere. Briefly, the outline of the scoring system utilized for the assay is as follows:
1) First tier (0-40 range) is reserved for primary and single-concentration confirmation screening data.
a. If outcome of the primary screen is inactive, then the assigned score is 0
b. If outcome of the primary screen is inconclusive, then the assigned score is 10
c. If outcome of the primary screen is active, then the assigned score is 20
d. If outcome of the single-concentration confirmation screen is inactive, then the assigned score is 21
e. If outcome of the single-concentration confirmation screen is inconclusive, then the assigned score is 25
f. If outcome of the single-concentration confirmation screen is active, then the assigned score is 30.
This scoring system helps track the stage of the testing of a particular SID. For the primary hits which are available for confirmation, their scores will be greater than 20. For those which are not further confirmed, their score will stay under 21.
2) Second tier (41-80 range) is reserved for dose-response confirmation data and is not applicable in this assay
3) Third tier (81-100 range) is reserved for resynthesized true positives and their analogues and is not applicable in this assay
Result Definitions
Show more
TIDNameDescriptionHistogramTypeUnit
OutcomeThe BioAssay activity outcomeOutcome
ScoreThe BioAssay activity ranking scoreInteger
1%Activity at 5 uM_Mean (5μM**)Mean %InhibitionFloat%
2%Activity at 5 uM_1 (5μM**)%Inhibition of the replicateFloat%
3%Activity at 5 uM_2 (5μM**)%Inhibition of the replicateFloat%
4%Activity at 5 uM_3 (5μM**)%Inhibition of the replicateFloat%
5%Activity at 5 uM_4 (5μM**)%Inhibition of the replicateFloat%
6%Activity at 5 uM_5 (5μM**)%Inhibition of the replicateFloat%
7%Activity at 5 uM_6 (5μM**)%Inhibition of the replicateFloat%
8%Activity at 5 uM_7 (5μM**)%Inhibition of the replicateFloat%
9%Activity at 5 uM_8 (5μM**)%Inhibition of the replicateFloat%
10Value_1 (5μM**)Measured value for the sampleFloatRFU
11Value_2 (5μM**)Measured value for the sampleFloatRFU
12Value_3 (5μM**)Measured value for the sampleFloatRFU
13Value_4 (5μM**)Measured value for the sampleFloatRFU
14Value_5 (5μM**)Measured value for the sampleFloatRFU
15Value_6 (5μM**)Measured value for the sampleFloatRFU
16Value_7 (5μM**)Measured value for the sampleFloatRFU
17Value_8 (5μM**)Measured value for the sampleFloatRFU
18Mean High_1Mean Fluorescent signal of negative controls in the corresponding plateFloatRFU
19Mean High_2Mean Fluorescent signal of negative controls in the corresponding plateFloatRFU
20Mean High_3Mean Fluorescent signal of negative controls in the corresponding plateFloatRFU
21Mean High_4Mean Fluorescent signal of negative controls in the corresponding plateFloatRFU
22Mean High_5Mean Fluorescent signal of negative controls in the corresponding plateFloatRFU
23Mean High_6Mean Fluorescent signal of negative controls in the corresponding plateFloatRFU
24Mean High_7Mean Fluorescent signal of negative controls in the corresponding plateFloatRFU
25Mean High_8Mean Fluorescent signal of negative controls in the corresponding plateFloatRFU
26STD Deviation High_1Standard deviation (n=64) of negative controls in the corresponding plateFloatRFU
27STD Deviation High_2Standard deviation (n=64) of negative controls in the corresponding plateFloatRFU
28STD Deviation High_3Standard deviation (n=64) of negative controls in the corresponding plateFloatRFU
29STD Deviation High_4Standard deviation (n=64) of negative controls in the corresponding plateFloatRFU
30STD Deviation High_5Standard deviation (n=64) of negative controls in the corresponding plateFloatRFU
31STD Deviation High_6Standard deviation (n=64) of negative controls in the corresponding plateFloatRFU
32STD Deviation High_7Standard deviation (n=64) of negative controls in the corresponding plateFloatRFU
33STD Deviation High_8Standard deviation (n=64) of negative controls in the corresponding plateFloatRFU
34Mean Low_1Mean Fluorescent signal of positive controls in the corresponding plateFloatRFU
35Mean Low_2Mean Fluorescent signal of positive controls in the corresponding plateFloatRFU
36Mean Low_3Mean Fluorescent signal of positive controls in the corresponding plateFloatRFU
37Mean Low_4Mean Fluorescent signal of positive controls in the corresponding plateFloatRFU
38Mean Low_5Mean Fluorescent signal of positive controls in the corresponding plateFloatRFU
39Mean Low_6Mean Fluorescent signal of positive controls in the corresponding plateFloatRFU
40Mean Low_7Mean Fluorescent signal of positive controls in the corresponding plateFloatRFU
41Mean Low_8Mean Fluorescent signal of positive controls in the corresponding plateFloatRFU
42STD Deviation Low_1Standard deviation (n=64) of positive controls in the corresponding plateFloatRFU
43STD Deviation Low_2Standard deviation (n=64) of positive controls in the corresponding plateFloatRFU
44STD Deviation Low_3Standard deviation (n=64) of positive controls in the corresponding plateFloatRFU
45STD Deviation Low_4Standard deviation (n=64) of positive controls in the corresponding plateFloatRFU
46STD Deviation Low_5Standard deviation (n=64) of positive controls in the corresponding plateFloatRFU
47STD Deviation Low_6Standard deviation (n=64) of positive controls in the corresponding plateFloatRFU
48STD Deviation Low_7Standard deviation (n=64) of positive controls in the corresponding plateFloatRFU
49STD Deviation Low_8Standard deviation (n=64) of positive controls in the corresponding plateFloatRFU

** Test Concentration.
Additional Information
Grant Number: IR21 NS061743-01

Data Table (Concise)
Data Table ( Complete ):     View Active Data    View All Data
Classification
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