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BioAssay: AID 602365

FLuc inhibitory activity for the follow-up compounds in a biochemical assay with 1mM D-luciferin

Firefly (Photinus pyralis) luciferase is one of the most commonly used transcriptional reporters. It is considered one of the more dynamically responsive reporters - that is, responsive to changes in reporter transcription - as it requires no post-translational modifications and is enzymatically active directly after protein synthesis (Wood, 1998). With no endogenous expression in mammalian cells and without the requirement of external excitation, it offers very little background signal, thus generally providing excellent signal to background for most assays. ..more
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 Tested Compounds
 Tested Compounds
All(151)
 
 
Active(74)
 
 
Inactive(45)
 
 
Inconclusive(32)
 
 
 Tested Substances
 Tested Substances
All(151)
 
 
Active(74)
 
 
Inactive(45)
 
 
Inconclusive(32)
 
 
AID: 602365
Data Source: NCGC (FLUC1004)
BioAssay Type: Confirmatory, Concentration-Response Relationship Observed
Depositor Category: Other
Deposit Date: 2012-03-12

Data Table ( Complete ):           View Active Data    View All Data
Target
BioActive Compounds: 74
Related Experiments
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AIDNameTypeComment
2309Probe Summary for Inhibitors and Stabilizers of Firefly LuciferaseSummarydepositor-specified cross reference
411qHTS Assay for Inhibitors of Firefly LuciferaseConfirmatorysame project related to Summary assay
2228Thermal Shift Assay for Inhibitors of FLuc (Firefly Luciferase, Photinus pyralis) in Presence of ATPScreeningsame project related to Summary assay
2229Thermal Shift Assay for Inhibitors of FLuc (Firefly Luciferase, Photinus pyralis) in Absence of ATPScreeningsame project related to Summary assay
588342qHTS profiling assay for firefly luciferase inhibitor/activator using purifed enzyme and Km concentrations of substrates (counterscreen for miR-21 project)Confirmatorysame project related to Summary assay
602357FLuc inhibitory activity for the follow-up compounds in a biochemical assay with Km concentrations of substrateConfirmatorysame project related to Summary assay
602358FLuc inhibitory activity for the follow-up compounds in a biochemical assay with Km concentrations of substrate and 500microM CoASHConfirmatorysame project related to Summary assay
602364FLuc inhibitory activity for the follow-up compounds in a biochemical assay with 1mM ATPConfirmatorysame project related to Summary assay
602474FLuc inhibitory activity for the follow-up compounds in a biochemical assay with a commercial detection reagent - BriteliteTM Plus (PerkinElmer)Confirmatorysame project related to Summary assay
602475FLuc inhibitory activity for the follow-up compounds in a biochemical assay with an in-house formulation of detection reagentConfirmatorysame project related to Summary assay
602476FLuc inhibitory activity for the follow-up compounds in a cell-based translational read-through assayConfirmatorysame project related to Summary assay
602477FLuc inhibitory activity for the follow-up compounds in a cell-based assay to assess the activity of miR-21Confirmatorysame project related to Summary assay
602478FLuc inhibitory activity for the follow-up compounds in a cell-based translational read-through assay (72 hour incubation)Confirmatorysame project related to Summary assay
624030Biochemical firefly luciferase enzyme assay for NPCConfirmatorysame project related to Summary assay
652016qHTS Assay for Inhibitors of Firefly Luciferase from the GSK Published Protein Kinase Inhibitor SetConfirmatorysame project related to Summary assay
Description:
NCGC Assay Overview:

Firefly (Photinus pyralis) luciferase is one of the most commonly used transcriptional reporters. It is considered one of the more dynamically responsive reporters - that is, responsive to changes in reporter transcription - as it requires no post-translational modifications and is enzymatically active directly after protein synthesis (Wood, 1998). With no endogenous expression in mammalian cells and without the requirement of external excitation, it offers very little background signal, thus generally providing excellent signal to background for most assays.

Previous profiling work to determine the prevalence of compounds that affect FLuc enzymatic activity (PubChem AID 411) identified that ~3% of the MLSMR library (then at ~72K) inhibited FLuc. The MLSMR library was again profiled at a later date (when the library contained significantly more compounds - ~350K) for FLuc activity in a biochemical assay using purified FLuc in the presence of KM concentrations of substrates (D-LH2 and ATP), in an effort to identify compounds in the library that may act as competitive inhibitors. Of the compounds identified in this profile that inhibited FLuc, 151 compounds were selected for further analysis, in an effort to better understand their mode of inhibiting FLuc. The assay described here was to determine the activity of the compounds in a FLuc assay that contained a KM concentration of ATP and a high concentration (1mM) of D-luciferin.
Protocol
NCGC Assay Protocol Summary:
Reagents: 50mM Tris acetate, pH 7.5; 10mM Mg acetate; 1mM D-luciferin (Sigma #L9504); 10uM ATP; 0.01% Tween-20; 0.05% BSA; 10nM P. pyralis luciferase (Sigma #L9506)
Control compounds used were two known firefly luciferase inhibitors (3-(5-(3-chlorophenyl)-1,2,4-oxadiazol-3-yl)benzoic acid and 5-(2-fluorophenyl)-3-phenyl-1,2,4-oxadiazole), and DMSO.
Three microliters containing firefly luciferase substrates in buffer (final concentrations: 50mM Tris acetate, pH 7.5, 10mM Mg acetate, 0.01% Tween-20, 0.05% BSA, 1mM D-luciferin, 10uM ATP) are dispensed into each well of a Greiner white, solid-bottom 1536-well format plate using a flying reagent dispenser (FRD). These assay plates were then treated with 23nL of compound or DMSO using a Kalypsys pin tool, which allows for delivery of a 12-point intraplate titration of each compound to the assay plate (quantitative HTS), with a final compound concentrations ranging from approximately ~60uM to 0.3nM. One microliter of firefly luciferase in 500mM Tris-acetate buffer was then delivered by FRD to each well for a final enzyme concentration of 10nM. Luciferase activity was then measured using a ViewLux CCD imager (PerkinElmer), with an average exposure time of 2-30 seconds (2X binning, medium/high gain).
Comment
Compound Ranking:
1. Compounds are first classified as having full titration curves, partial modulation, partial curve (weaker actives), single point activity (at highest concentration only), or inactive. See data field "Curve Description". For this assay, apparent inhibitors are ranked higher than compounds that showed apparent activation.
2. For all inactive compounds, PUBCHEM_ACTIVITY_SCORE is 0. For all active compounds, a score range was given for each curve class type given above. Active compounds have PUBCHEM_ACTIVITY_SCORE between 40 and 100. Inconclusive compounds have PUBCHEM_ACTIVITY_SCORE between 1 and 39. Fit_LogAC50 was used for determining relative score and was scaled to each curve class' score range.
Categorized Comment - additional comments and annotations
From PubChem:
Assay Format: Biochemical
From ChEMBL:
Assay Type: Functional
Result Definitions
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TIDNameDescriptionHistogramTypeUnit
OutcomeThe BioAssay activity outcomeOutcome
ScoreThe BioAssay activity ranking scoreInteger
1PhenotypeIndicates type of activity observed: inhibitor, activator, fluorescent, cytotoxic, inactive, or inconclusive.String
2Potency*Concentration at which compound exhibits half-maximal efficacy, AC50. Extrapolated AC50s also include the highest efficacy observed and the concentration of compound at which it was observed.FloatμM
3EfficacyMaximal efficacy of compound, reported as a percentage of control. These values are estimated based on fits of the Hill equation to the dose-response curves.Float%
4Analysis CommentAnnotation/notes on a particular compound's data or its analysis.String
5Activity_ScoreActivity score.Integer
6Curve_DescriptionA description of dose-response curve quality. A complete curve has two observed asymptotes; a partial curve may not have attained its second asymptote at the highest concentration tested. High efficacy curves exhibit efficacy greater than 80% of control. Partial efficacies are statistically significant, but below 80% of control.String
7Fit_LogAC50The logarithm of the AC50 from a fit of the data to the Hill equation (calculated based on Molar Units).Float
8Fit_HillSlopeThe Hill slope from a fit of the data to the Hill equation.Float
9Fit_R2R^2 fit value of the curve. Closer to 1.0 equates to better Hill equation fit.Float
10Fit_InfiniteActivityThe asymptotic efficacy from a fit of the data to the Hill equation.Float%
11Fit_ZeroActivityEfficacy at zero concentration of compound from a fit of the data to the Hill equation.Float%
12Fit_CurveClassNumerical encoding of curve description for the fitted Hill equation.Float
13Excluded_PointsWhich dose-response titration points were excluded from analysis based on outlier analysis. Each number represents whether a titration point was (1) or was not (0) excluded, for the titration series going from smallest to highest compound concentrations.String
14Max_ResponseMaximum activity observed for compound (usually at highest concentration tested).Float%
15Activity at 0.0003244270 uM (0.000324427μM**)% Activity at given concentration.Float%
16Activity at 0.0009719557 uM (0.000971956μM**)% Activity at given concentration.Float%
17Activity at 0.00293 uM (0.00292685μM**)% Activity at given concentration.Float%
18Activity at 0.00876 uM (0.00875953μM**)% Activity at given concentration.Float%
19Activity at 0.014 uM (0.0140311μM**)% Activity at given concentration.Float%
20Activity at 0.026 uM (0.0262786μM**)% Activity at given concentration.Float%
21Activity at 0.056 uM (0.0561243μM**)% Activity at given concentration.Float%
22Activity at 0.079 uM (0.0788358μM**)% Activity at given concentration.Float%
23Activity at 0.236 uM (0.236346μM**)% Activity at given concentration.Float%
24Activity at 0.710 uM (0.709522μM**)% Activity at given concentration.Float%
25Activity at 0.898 uM (0.897989μM**)% Activity at given concentration.Float%
26Activity at 2.129 uM (2.12857μM**)% Activity at given concentration.Float%
27Activity at 3.592 uM (3.59195μM**)% Activity at given concentration.Float%
28Activity at 6.386 uM (6.3857μM**)% Activity at given concentration.Float%
29Activity at 19.09 uM (19.0852μM**)% Activity at given concentration.Float%
30Activity at 57.47 uM (57.4713μM**)% Activity at given concentration.Float%
31Compound QCNCGC designation for data stage: 'qHTS', 'qHTS Verification', 'Secondary Profiling'String

* Activity Concentration. ** Test Concentration.

Data Table (Concise)
Data Table ( Complete ):     View Active Data    View All Data
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