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BioAssay: AID 522

Primary Cell-based High Throughput Screening assay for activators of the nuclear receptor Steroidogenic Factor 1 (SF-1)

Name: Primary Cell-based High Throughput Screening assay for activators of the nuclear receptor Steroidogenic Factor 1 (SF-1) ..more
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 Tested Compounds
 Tested Compounds
All(64907)
 
 
Active(1225)
 
 
Inactive(63682)
 
 
 Tested Substances
 Tested Substances
All(64925)
 
 
Active(1225)
 
 
Inactive(63700)
 
 
AID: 522
Data Source: The Scripps Research Institute Molecular Screening Center (SF1_AG_LUMI_1536_%ACT)
BioAssay Type: Primary, Primary Screening, Single Concentration Activity Observed
Depositor Category: NIH Molecular Libraries Screening Center Network
BioAssay Version:
Deposit Date: 2006-11-07
Modify Date: 2007-04-03

Data Table ( Complete ):           View Active Data    View All Data
Target
BioActive Compounds: 1225
Related Experiments
AIDNameTypeComment
675Counterscreen for activators of the nuclear receptor Steroidogenic Factor 1 (SF-1): A cell-based dose-response assay for inhibition of the RAR-related orphan receptor A (RORA)Confirmatorydepositor-specified cross reference
681Dose-response cell-based assay for activators of the Retinoic Acid Receptor-related orphan receptor A (RORA)Confirmatorydepositor-specified cross reference
692Dose-response cell-based assay for activators of the nuclear receptor Steroidogenic Factor 1 (SF-1)Confirmatorydepositor-specified cross reference
695Counterscreen for activators of the Retinoic Acid Receptor-related orphan receptor A (RORA): A cell-based dose-response assay for inhibition of the Steroidogenic Factor 1 (SF-1)Confirmatorydepositor-specified cross reference
1951Summary of probe development efforts to identify activators of the nuclear receptor Steroidogenic Factor 1 (SF-1).Summarydepositor-specified cross reference
1954Summary of probe development efforts to identify activators of the Retinoic Acid Receptor-related orphan receptor A (RORA).Summarydepositor-specified cross reference
560Primary Cell-based High Throughput Screening assay for activators of the Retinoic Acid Receptor-related orphan receptor A (RORA)Screeningsame project related to Summary assay
560Primary Cell-based High Throughput Screening assay for activators of the Retinoic Acid Receptor-related orphan receptor A (RORA)Screeningsame project related to Summary assay
Description:
Source (MLSCN Center Name): The Scripps Research Institute Molecular Screening Center
Center Affiliation: The Scripps Research Institute, TSRI
Assay Provider: Orphagen Pharmaceuticals, San Diego, CA
Network: Molecular Library Screening Center Network (MLSCN)
Grant Proposal Number: 1X01-MH077624-01

External Assay ID: SF1_AG_LUMI_1536_%ACT

Name: Primary Cell-based High Throughput Screening assay for activators of the nuclear receptor Steroidogenic Factor 1 (SF-1)

Description:

Nuclear receptors are a family of small molecule and hormone-regulated transcription factors that share conserved DNA-binding and ligand-binding domains.

Small pharmacological compounds able to bind to the cleft of the ligand-binding domain could alter its conformation and subsequently modify transcription of target genes.

Such ligand agonists and/or antagonists have already been successfully designed for 23 nuclear receptors among the 48 previously identified in the human genome [1-3].

The nuclear receptor SF-1 (steroidogenic factor-1) belongs to the class of "unexplored" orphan nuclear receptors that have been poorly investigated at a pharmacological level.

SF-1 is expressed in the pituitary, testes, ovaries, and adrenal gland and regulates steroid hormone production at many levels, including direct regulation of expression of major P450 enzymes involved in steroid hormone synthesis [4].

To explore the potential of SF-1 as novel drug target, small molecule ligands have to be identified. To this end, we screened the MLSCN library via a cell-based assay developed by Orphagen Pharmaceuticals (San Diego, CA).

Ligands for SF-1 may have clinical applications as modulators of adrenal steroid synthesis, and also as modulators of energy metabolism and obesity through the regulation of the ventromedial hypothalamus (VMH) [5].
Protocol
Assay Overview:

The transcriptional cell-based assay utilizes a fusion of the DNA-binding domain of the yeast transcriptional factor Gal4 with the ligand-binding domain of target receptor SF-1 (encoded by the pFA-hSF-1 plasmid, Orphagen Pharmaceuticals) to regulate a luciferase reporter containing 5xGal4 response elements at its promoter region (pG5-luc, Stratagene). Both pFA-hSF-1 and pG5-luc plasmids are transiently co-transfected in CHO-K1 (Chinese Hamster Ovary) cells. The presence in this cell line of required co-activators allows the expression of luciferase driven by activated SF-1 nuclear receptors. Compounds that enhance the basal transcription of luciferase are detected through the increase of light emission using the SteadyLite luciferase detection kit (Perkin Elmer). Such compounds hence constitute potential activators of the SF-1 nuclear receptor.

The primary HTS assay was conducted in 1536-well format. All compounds were tested once at a 10 micromolar final concentration.

Protocol Summary:

Six million CHO-K1 cells were seeded in T-175 flasks (Corning part#431080) containing 20 milliliters of F12 media (Invitrogen part#31765-092) supplemented with 10% v/v fetal bovine serum (Gemini part#900-108) and 1% v/v penicillin-streptomycin-neomycin mix (Invitrogen part#15640-055). Flasks were then incubated for 20 hours at 37 degrees Celsius, 5%CO2 and 95% relative humidity.

The following day, CHO-K1 cells were transiently transfected with the pG5-luc reporter plasmid (Stratagene) and the SF-1/Gal4 fusion expressing plasmid (pFA-hSF-1, Orphagen Pharmaceuticals). Transfection was performed using the TransIT-CHO transfection kit (Mirus part#2176) according to the manufacturer's protocol.

Flasks were designated +SF1 or -SF1. +SF1 flasks received 1.2 milliliters of F12 media containing 54uL of TransIT CHO reagent (Mirus), 9 uL of CHO Mojo reagent (Mirus), 9 ug of pG5-luc (Stratagene), 8.75 ug of empty pcDNA3.1 (Invitrogen), and 250 ng of pFA-hSF-1 plasmid (Orphagen Pharmaceuticals).

-SF1 designated flasks received exactly the same transfection reagents and DNA excepting plasmid pFA-hSF-1.

Flasks were then placed back in the incubator at 37 degrees Celsius, 5%CO2 and 95% relative humidity.

Four hours after transfection, cells were trypsinized and suspended to a concentration of 800,000 cells per milliliter in F12 media (Invitrogen part#31765-092) supplemented with 10% v/v heat inactivated fetal bovine serum (Gemini part#900-108) and 1% v/v penicillin-streptomycin-neomycin mix (Invitrogen part#15640-055).

The assay began by dispensing 5 microliters of cell suspension to each well (i.e. 4,000 cells/well) of a white solid-bottom 1536-well plate. Cells from flasks designated -SF1 were seeded in the first two columns of the 1536-well plate (mock-transfected, background) and the remaining 46 columns were filled with +SF1 cells.

One hour after seeding, +SF1 cells were treated with 50 nL/well of test compounds (i.e. 10 micromolar) or DMSO (negative control) and -SF1 cells with 50nL/well of DMSO (background). Plates were then placed in the incubator at 37 degrees Celsius, 5% CO2 and 95% relative humidity.

Twenty hours later, plates were equilibrated to room temperature for 20 minutes. A luciferase assay was performed by adding 5 microliters per well of the SteadyLite HTS reagent (Perkin Elmer part#6016989). After a 15 minutes incubation time, light emission was measured with the ViewLux reader (Perkin Elmer).

The percent activation of each compound has been calculated as follow:

%activation = 100 x (( RLU_compound - Median_RLU_negative_control ) / ( Median_RLU_negative_control - Median_RLU_background ))

with background: -SF1 cells treated with 1% DMSO
and negative control: +SF1 cells treated with 1% DMSO

A mathematical algorithm was used to determine nominally active compounds.
Two values were calculated: (1) the average percent activation of all compounds tested, and (2) three times their standard deviation. The sum of these two values was used as a cutoff parameter, i.e. any compound that exhibited greater %activation than the cutoff parameter was declared active.

The reported Pubchem_Activity_Score has been normalized to 100% of the highest observed primary activation. Negative % activation values are reported as activity score zero.
Comment
All data reported were normalized on a per-plate basis.
Possible artifacts of this assay can include, but are not limited to:
compounds that induce cell proliferation, compounds that increase luciferase activity, compounds that non-specifically activate transcriptional activity.
Result Definitions
TIDNameDescriptionHistogramTypeUnit
OutcomeThe BioAssay activity outcomeOutcome
ScoreThe BioAssay activity ranking scoreInteger
1Activation_Primary at 10 uMNormalized percent activation of the primary screen at a compound concentration of 10 micromolar.Float%

Data Table (Concise)
Data Table ( Complete ):     View Active Data    View All Data
Classification
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