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BioAssay: AID 504846

SAR analysis for compounds that inhibit the two-pore domain potassium channel KCNK9

Assay Implementation: Melissa Miller, Shunyou Long M.S., David Meyers Ph.D., Meng Wu Ph. D., Owen McManus Ph. D. ..more
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 Tested Compounds
 Tested Compounds
All(5)
 
 
Inactive(5)
 
 
 Tested Substances
 Tested Substances
All(5)
 
 
Inactive(5)
 
 
AID: 504846
Data Source: Johns Hopkins Ion Channel Center (KCNK9_Inh_SAR_CRC)
BioAssay Type: Confirmatory, Concentration-Response Relationship Observed
Depositor Category: NIH Molecular Libraries Probe Production Network
Deposit Date: 2011-06-24
Hold-until Date: 2012-06-21
Modify Date: 2012-06-21

Data Table ( Complete ):           View All Data
Target
Tested Compounds:
Related Experiments
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AIDNameTypeComment
92992Inhibition of ADP induced aggregation of human platelets after 15 min of incubation of the drug with PRP prior to the addition of ADPConfirmatorydepositor-specified cross reference: Confirmatory screen for identification of compounds that inhibit the two-pore domain potassium chann
488922Primary cell-based screen for identification of compounds that inhibit the two-pore domain potassium channel KCNK9Screeningdepositor-specified cross reference: Primary cell-based screen for identification of compounds that inhibit the two-pore domain potassium
488964Summary of probe development for inhibitors of the two-pore domain potassium channel KCNK9Summarydepositor-specified cross reference: Summary of probe development for inhibitors of the two-pore domain potassium channel KCNK9
492997Second counter screen for compounds that modulate the two-pore domain potassium channel (KCNK9)Screeningdepositor-specified cross reference: Second counter screen for compounds that modulate the two-pore domain potassium channel (KCNK9)
504902SAR Analysis for the identification of selective inhibitors of KCNK9 against parental cells: FluxOR Assay CRCConfirmatorydepositor-specified cross reference
540322SAR analysis for compounds that inhibit the two-pore domain potassium channel KCNK9 IIConfirmatorydepositor-specified cross reference
540324SAR Analysis for the identification of selective inhibitors of KCNK9 against parental cells: FluxOR Assay CRC 2Confirmatorydepositor-specified cross reference
588724SAR analysis for compounds that inhibit the two-pore domain potassium channel KCNK9 IIIConfirmatorydepositor-specified cross reference
588759SAR Analysis for the identification of selective inhibitors of KCNK9 against parental cells: FluxOR Assay CRC 3Confirmatorydepositor-specified cross reference
588761SAR Analysis for the identification of selective inhibitors of the two-pore domain potassium channel KCNK9 in KCNQ2 expressing cells: FluxOR Assay CRCConfirmatorydepositor-specified cross reference
588776SAR Analysis for the identification of selective inhibitors of the two-pore domain potassium channel KCNK9 in KCNK3 expressing cells: FluxOR Assay CRC 1Confirmatorydepositor-specified cross reference
588798SAR Analysis for the identification of selective inhibitors of the two-pore domain potassium channel KCNK9 in KCNQ2 expressing cells: FluxOR Assay CRC 3Confirmatorydepositor-specified cross reference
588800SAR Analysis for the identification of selective inhibitors of the two-pore domain potassium channel KCNK9 in KCNQ2 expressing cells: FluxOR Assay CRC 2Confirmatorydepositor-specified cross reference
623887SAR analysis for compounds that inhibit the two-pore domain potassium channel KCNK9 4Confirmatorydepositor-specified cross reference
492992Confirmatory screen for identification of compounds that inhibit the two-pore domain potassium channel (KCNK9)Screeningsame project related to Summary assay
492993Specificity screen against Kir2.1 for compounds that modulate the two-pore domain potassium channel (KCNK9)Screeningsame project related to Summary assay
504920SAR Analysis for the identification of selective inhibitors of the two-pore domain potassium channel KCNK9 in hERG expressing cells: FluxOR Assay CRC for hERG SpecificityConfirmatorysame project related to Summary assay
504922SAR Analysis for the identification of selective inhibitors of the two-pore domain potassium channel KCNK9 in Kir2.1 expressing cells: FluxOR Assay CRCConfirmatorysame project related to Summary assay
540321SAR Analysis for the identification of selective inhibitors of the two-pore domain potassium channel KCNK9 in Kir2.1 expressing cells: FluxOR Assay CRC 2Confirmatorysame project related to Summary assay
540323SAR Analysis for the identification of selective inhibitors of the two-pore domain potassium channel KCNK9 in hERG expressing cells: FluxOR Assay CRC 2Confirmatorysame project related to Summary assay
588741SAR Analysis for the identification of selective inhibitors of the two-pore domain potassium channel KCNK9 in hERG expressing cells: FluxOR Assay CRC 3Confirmatorysame project related to Summary assay
588760SAR Analysis for the identification of selective inhibitors of the two-pore domain potassium channel KCNK9 in Kir2.1 expressing cells: FluxOR Assay CRC 3Confirmatorysame project related to Summary assay
623881SAR Analysis for the identification of selective inhibitors of the two-pore domain potassium channel KCNK9 in Kir2.1 expressing cells: FluxOR Assay CRC 4Confirmatorysame project related to Summary assay
623883SAR Analysis for the identification of inhibitors of the two-pore domain potassium channel KCNK9 - Selectivity assay against hERG: FluxOR Assay CRC 4Confirmatorysame project related to Summary assay
623884SAR Analysis for the identification of selective inhibitors of KCNK9 against parental cells: FluxOR Assay CRC 4Confirmatorysame project related to Summary assay
623886SAR Analysis for the identification of inhibitors of the two-pore domain potassium channel KCNK9 - Selectivity assay against KCNQ2: FluxOR Assay CRCConfirmatorysame project related to Summary assay
623894SAR Analysis for the identification of inhibitors of the two-pore domain potassium channel KCNK9 - Selectivity assay against KCNK3: FluxOR Assay CRC 3Confirmatorysame project related to Summary assay
623898SAR analysis for the identification of selective inhibitors of the two-pore domain potassium channel (KCNK9): Automated ElectrophysiologyConfirmatorysame project related to Summary assay
623912SAR Analysis for the identification of inhibitors of the two-pore domain potassium channel KCNK9 - Selectivity assay against KCNK3: FluxOR Assay CRC 2Confirmatorysame project related to Summary assay
623913SAR Analysis for the identification of inhibitors of the two-pore domain potassium channel KCNK9 - Selectivity assay against KCNQ2: FluxOR Assay CRC 4Confirmatorysame project related to Summary assay
623914SAR Analysis for the identification of inhibitors of the two-pore domain potassium channel KCNK9 - Selectivity assay against KCNQ2: FluxOR Assay CRC 2Confirmatorysame project related to Summary assay
623915SAR analysis for the identification of selective inhibitors of the two-pore domain potassium channel (KCNK9) -selectivity assay against KCNK3: Automated ElectrophysiologyConfirmatorysame project related to Summary assay
624121SAR analysis for the identification of selective inhibitors of the two-pore domain potassium channel (KCNK9): Manual ElectrophysiologyOthersame project related to Summary assay
Description:
Data Source: Johns Hopkins Ion Channel Center (JHICC)
BioAssay Type: Confirmatory, Concentration-Response Relationship Observed
Source (MLPCN Center Name): Johns Hopkins Ion Channel Center (JHICC)
Center Affiliation: Johns Hopkins University, School of Medicine
Screening Center PI: Min Li, Ph.D.
Assay Provider: Meng Wu, Ph.D., Johns Hopkins University, School of Medicine
Network: Molecular Libraries Probe Production Centers Network (MLPCN)
Grant Proposal Number: R03 MH090849-01
Grant Proposal PI: Meng Wu, Ph.D., Johns Hopkins University, School of Medicine
Assay Implementation: Melissa Miller, Shunyou Long M.S., David Meyers Ph.D., Meng Wu Ph. D., Owen McManus Ph. D.
Name: SAR analysis for compounds that inhibit the two-pore domain potassium channel KCNK9


Description:

The purpose of this assay is to test dose dependent responses for compounds that inhibit KCNK9. The same protocol is employed for this assay as the primary screen (AID: 488922), except that each compound is tested at multiple concentrations. A HEK293 cell line which stably expresses KCNK9 was employed, and channel activity monitored by use of a thallium sensitive dye (FluxORtrade mark). Compounds that inhibit KCNK9 result in less accumulation of intracellular thallium. This decrease in thallium will result in a change in the fluorescence of the Flux OR dye.
Protocol
Protocol:
1. Cell culture: Cells are routinely cultured in DMEM/F12 medium, supplemented with 10% Fetal Bovine Serum (FBS), 50 IU/ml penicillin, 50ug/ml streptomycin, and 500ug/ml G418.
2. Cell plating: Add 50 ul/well of 300,000 cells/ml re-suspended in DMEM/F12 medium with 10% FBS
3. Incubate overnight at 37C and 5% CO2
4. Remove medium and add 25 ul/well of 1x FluxOR solution to cells
5. Incubate 90 minutes, at room temperature (RT), in the dark
6. Prepare 7.5X compound plates and control plates on Cybi-Well system: test compounds are prepared using assay buffer; controls are assay buffer (IC0), and ICmax of SID17386958
7. Remove FluxOR dye solution and add 20 ul/well of assay buffer to cells
8. Add 4 ul of 7.5x compound stock into the cell plates via Cybi-Well system
9. Incubate all cell plates for 20 minutes at RT in the dark
10. Prepare 5x stimulus buffer containing 25 mM K2SO4 and 7 mM Tl2SO4
11. Load cell plates to Hamamatsu FDSS 6000 kinetic imaging plate reader
12. Measure fluorescence for 10 seconds at 1Hz to establish baseline
13. Add 6 ul/well of stimulus buffer onto cells and continue measuring fluorescence for 110 seconds
14. Calculate ratio readout as F(max-min)/F0
15. Calculate the average and standard deviation for negative and positive
controls in each plate, as well as Z and Z' prime factors
16. IC50 and Hill Constant calculation from replicates was generated using Microcol Origin 6.0
17. Outcome assignment: If the test compound causes inhibition of KCNK9 in any concentration tested, and a dose response is generated, the compound is considered to be active (outcome=2).
If the test compound does not cause inhibition of KCNK9 at any concentration tested or a dose response is not generated, the compound is designated as inactive (outcome=1).
18. Score assignment: Compounds with an IC50 less than 1uM are given a score of 100, 1uM-5uM a score of 75, 5uM-10uM a score of 50, 10uM-20uM a score of 25 and any compound with an IC50 greater than 20uM or those that are designated inactive in the outcome are given a score of 0
List of reagents
1. KCNK9-expressing HEK293 Cells (provided by Sojin Shikano, PhD, DVM, University of Illinois at Chicago)
2. Dulbecco's Modified Eagle Medium (D-MEM) (1X), liquid (high glucose) w/L-Glut (Mediatech, Cat#10-013-CV)
3. Fetal Bovine Serum (Gibco, Cat#26140)
4. L-Glutamine (Invitrogen, Cat#25030081)
5. 100x Penicillin-Streptomycin (Mediatech, Cat#30-001-CI)
6. CellStripper (Mediatech, Cat#25-056-Cl)
7. Blasticidin S (Research Products Internationl Corp., Cat#B12150)
8. Hygromycin (Mediatech, Cat#30-240-CR)
9. HEPES (Sigma, Cat#H4034)
10. 10XHBSS (Invitrogen, Cat#14065056)
11. Tetracycline (SIGMA, Cat#T7660)
12. SID 17386958 (Chembridge, Cat#8926102)
13. FluxOR detection kit (Invitrogen, Cat#F10017)
14. Triple-layer flask (VWR, Cat#62407-082)
15. BD Biocoat 384-well plates (BD, Cat#(35)4663 and Lot #7346273)
Comment
Possible artifacts of this assay can include, but are not limited to: non-intended chemicals or dust, in or on wells of the microtiter plate, compounds that non-specifically modulate the cell host or the targeted activity, and compounds that quench or emit light or fluorescence within the well. All test compound concentrations reported are nominal; the specific concentration for a particular test compound may vary, based upon the actual sample provided by the MLSMR.
Categorized Comment - additional comments and annotations
From PubChem:
Assay Cell Type: HEK293
Result Definitions
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TIDNameDescriptionHistogramTypeUnit
OutcomeThe BioAssay activity outcomeOutcome
1Ratio at 30uM (30μM**)Ratio for KCNK9 at the specified compound concentrationFloat
2SD at 30uMStandard Deviation of measurement of KCNK9 ratio at the specified concentrationFloat
3Ratio at 10uM (10μM**)Ratio for KCNK9 at the specified compound concentrationFloat
4SD at 10uMStandard Deviation of measurement of KCNK9 ratio at the specified concentrationFloat
5Ratio at 3.33uM (3.33μM**)Ratio for KCNK9 at the specified compound concentrationFloat
6SD at 3.33uMStandard Deviation of measurement of KCNK9 ratio at the specified concentrationFloat
7Ratio at 1.11uM (1.11μM**)Ratio for KCNK9 at the specified compound concentrationFloat
8SD at 1.11uMStandard Deviation of measurement of KCNK9 ratio at the specified concentrationFloat
9Ratio at 370nM (0.37μM**)Ratio for KCNK9 at the specified compound concentrationFloat
10SD at 370nMStandard Deviation of measurement of KCNK9 ratio at the specified concentrationFloat
11Ratio at 123nM (0.123μM**)Ratio for KCNK9 at the specified compound concentrationFloat
12SD at 123nMStandard Deviation of measurement of KCNK9 ratio at the specified concentrationFloat
13Ratio at 41.1nM (0.041μM**)Ratio for KCNK9 at the specified compound concentrationFloat
14SD at 41.1nMStandard Deviation of measurement of KCNK9 ratio at the specified concentrationFloat
15Ratio at 13.7nM (0.013μM**)Ratio for KCNK9 at the specified compound concentrationFloat
16SD at 13.7nMStandard Deviation of measurement of KCNK9 ratio at the specified concentrationFloat
17Ratio at 4.57nM (0.00457μM**)Ratio for KCNK9 at the specified compound concentrationFloat
18SD at 4.57nMStandard Deviation of measurement of KCNK9 ratio at the specified concentrationFloat
19Ratio at 1.52nM (0.00152μM**)Ratio for KCNK9 at the specified compound concentrationFloat
20SD at 1.52nMStandard Deviation of measurement of KCNK9 ratio at the specified concentrationFloat
21NNumber of replicates for KCNK9 ratio measurementsInteger
22Hill ConstantHill constant of fittingFloat
23IC50*IC50 (uM)FloatμM

* Activity Concentration. ** Test Concentration.
Additional Information
Grant Number: 1 R03 MH090849-01

Data Table (Concise)
Data Table ( Complete ):     View All Data
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