Bookmark and Share
BioAssay: AID 463191

Dose response confirmation of HCS identification of small molecules that inhibit hepatic lipid droplet formation.

Medical researchers world-wide now use the term "epidemic" or "pandemic" to describe the alarming incidence of obesity in modern society, which is estimated to occur in 30% of the general US population. Perhaps, most alarming is the high incidence of obesity in children and adolescents, which indicates that medical problems associated with obesity (e.g., diabetes, metabolic syndrome, and heart more ..
_
   
 Tested Compounds
 Tested Compounds
All(241)
 
 
Active(189)
 
 
Inactive(52)
 
 
 Tested Substances
 Tested Substances
All(241)
 
 
Active(189)
 
 
Inactive(52)
 
 
 Related BioAssays
 Related BioAssays
AID: 463191
Data Source: Burnham Center for Chemical Genomics (SBCCG-A412-Lipid-Droplet-DR-Assay)
BioAssay Type: Confirmatory, Concentration-Response Relationship Observed
Depositor Category: NIH Molecular Libraries Probe Production Network
Deposit Date: 2010-09-02

Data Table ( Complete ):           View Active Data    View All Data
BioActive Compounds: 189
Related Experiments
Show more
AIDNameTypeComment
1656High Throughput Imaging Assay for Hepatic Lipid Droplet FormationScreeningdepositor-specified cross reference: Primary Screen
1658Summary Assay for the inhibition of Hepatic Lipid Droplet FormationSummarydepositor-specified cross reference: Summary AID.
463183Single concentration confirmation of HCS identification of small molecules that inhibit hepatic lipid droplet formationScreeningsame project related to Summary assay
463200HTS Counterscreen for Detection of Compound Cytotoxicity in Hepatocytes (AML12 cells)Screeningsame project related to Summary assay
463219Single concentration confirmation of compound cytotoxicity in hepatocytes (AML12 cells).Screeningsame project related to Summary assay
493092SAR Analysis for the identification of small molecules that inhibit hepatic lipid droplet formation using an image based screen.Confirmatorysame project related to Summary assay
504422SAR Analysis for the identification of small molecules that inhibit hepatic lipid droplet formation in human hepatocytes using an image based screen.Confirmatorysame project related to Summary assay
504440SAR Analysis for the identification of small molecules that inhibit hepatic lipid droplet formation using an image based screen - Set 2Confirmatorysame project related to Summary assay
504443SAR analysis of compound cytotoxicity in hepatocytes (AML12 cells)Confirmatorysame project related to Summary assay
Description:
Data Source: Sanford-Burnham Center for Chemical Genomics (SBCCG)
Source Affiliation: Sanford-Burnham Medical Research Institute(SBIMR, San Diego, CA)
Network: NIH Molecular Libraries Probe Production Centers Network (MLPCN)
Grant Proposal Number: 1 R03 MH083261-01A1
Assay Provider: Dr. Patrick M. McDonough, Vala Sciences Inc.

Medical researchers world-wide now use the term "epidemic" or "pandemic" to describe the alarming incidence of obesity in modern society, which is estimated to occur in 30% of the general US population. Perhaps, most alarming is the high incidence of obesity in children and adolescents, which indicates that medical problems associated with obesity (e.g., diabetes, metabolic syndrome, and heart disease) will increase in the foreseeable future, as obesity often increases with age. The dominant cellular basis for obesity is increased accumulation of triglycerides in lipid droplets within the cell. The two major cell types in which lipid droplet formation leads to pathological problems are adipocytes and hepatocytes.

The overall goal of this project is to identify chemical probes for inhibiting lipid droplet formation in hepatocytes. Identification of such compounds will better our understanding of the biochemical/molecular pathways that lead to the development of fatty liver disease, and may identify lead compounds for consideration for therapeutic development.

The goal of this assay is to confirm hits from "High Throughput Imaging Assay for Hepatic Lipid Droplet Formation" (AID 1656).

References:
Wu JC, Merlino G, Fausto N. Establishment and characterization of differentiated, nontransformed hepatocyte cell lines derived from mice transgenic for transforming growth factor alpha. Proc Natl Acad Sci U S A. Jan 18 1994;91(2):674-678.

de Alwis NM, Day CP. Non-alcoholic fatty liver disease: the mist gradually clears. J Hepatol. 2008;48 Suppl 1:S104-112.

Guo Y, Walther TC, Rao M, et al. Functional genomic screen reveals genes involved in lipid-droplet formation and utilization. Nature. May 29 2008;453(7195):657-661.

Beller M, Sztalryd C, Southall N, et al. COPI complex is a regulator of lipid homeostasis. PLoS Biol. Nov 25 2008;6(11):e292.

Szymanski KM, Binns D, Bartz R, et al. The lipodystrophy protein seipin is found at endoplasmic reticulum lipid droplet junctions and is important for droplet morphology. Proc Natl Acad Sci U S A. Dec 26 2007;104(52):20890-20895.
Protocol
Assay Materials:
1) 384-well plates, black with clear bottom (Greiner# 781091).
2) AML12 cells (mouse hepatocytes) were obtained from the ATCC.
3) Culture Media: phenol-red free DMEM with L-glutamine, Pen-strep, and 10% Fetal Bovine Serum.
4) Oleic Acid Working Solution: water soluble Oleic Acid (Sigma, O1257, 5mM stock in PBS) diluted to 1mM in PBS.
5) Positive Control Working Solution: Triacsin-C (Sigma, T4540 1mg/ml stock in DMSO) diluted to 50uM in PBS. Additional DMSO is added to achieve a DMSO concentration of 3.2%.
6) Fixative Working Solution: 6% Paraformaldehyde (PFA) in PBS.
7) Lipid Stain Working Solution: BODIPY 493/503 (Invitrogen, D3922) diluted to 5ug/mL in PBS.
8) Nuclear Stain Working Solution: DAPI (Invitrogen, D1306) diluted to 187.5ng/ml in DAPI buffer (10mM TRIS, 10mM EDTA, 100mM NaCl, pH 7.4).

Assay Protocol:
1) 45ul of cell suspension (178,000 cells/ml in culture medium) was dispensed in each well of the assay plates using a Wellmate (Matrix) bulk dispenser.
2) Plates were incubated plates overnight or approx. 20 hours at 37 degrees C and 5% CO2.
3) Compound addition was done on the ECHO555 Acoustic Dispenser. The "dose response protocol" was used to dispense corresponding volumes of each 10mM compound on the assay plate. Compounds were added to columns 3 to 22. Final concentrations ranged from 32uM to 0.5uM (seven doses), performed in duplicate. The protocol also included a DMSO backfill. The final DMSO concentration was 0.32%.
4) The ECHO555 Acoustic Dispenser was used to dispense DMSO to column 2 as a negative control (0.32% DMSO final)
5) 5ul of the positive control (50uM Triacsin-C) working solution was added to column 1 of each plate manually for a final assay concentration of 5uM Triacsin-C and 0.32% DMSO.
6) 5ul of oleic acid working solution was added to all wells using the Biomek FX (Beckman Coulter) with 384-head dispenser for a final assay oleic acid concentration of 100uM.
7) Plates were incubated overnight at 37 degree C and 5% CO2.
8) Media was aspirated leaving 20ul liquid in each well using a Titertek plate washer.
9) 40ul of fixative working solution was added to each well using a Wellmate bulk dispenser for a final concentration of 4% PFA and plates were allowed to fix for 40 minutes at room temperature.
10) Fixative was aspirated and plates were washed twice with 50ul PBS leaving 20ul liquid in each well using a Titertek plate washer.
11) 40ul of lipid stain working solution was added to each well using the Wellmate bulk dispenser for a final concentration of 3.3 ug/ml and plates were incubated for 1 hour at room temperature.
12) Stain solution was aspirated and plates were washed twice with 50ul PBS leaving 20ul liquid in each well using a Titertek plate washer.
13) 40ul of DAPI working solution was added using a Wellmate bulk dispenser for a final DAPI concentration of 125ng/ml and plates were sealed.

HCS System Settings and Image Analysis Protocol:
1) Image acquisition was performed on an Opera QEHS (Perkin Elmer) with 45 plate capacity loader/stacker and the following settings:
- 20x 0.45 NA air objective
- Acquisition camera set to 2-by-2 binning for an image size of 688 by 512 pixels
- 2 channels acquired sequentially: Exp1Cam1 = Bodipy 493/503 (lipid droplets) using 488 nm laser excitation and 540/70 emisssion filters, Exp2Cam4 = DAPI (nuclei) using 365 nm Xenon lamp excitation and 450/50 emission filters
- 4 fields per well
2) Image analysis was performed using Acapella (Perkin Elmer). The following Acapella software settings were used:
NUCLEI DETECTION
- Nuclear Detection Algorithm G
- Threshold Adjustment: 1.5
- Nuclear Splitting Adjustment: 5
- Minimum Nuclear Area: 70
- Minimum Nuclear Contrast: 0.1
CYTOPLASM DETECTION
- Cytoplasm Threshold Adjustment: 0.05
- Cytoplasm Individual Threshold Adjustment: 0.1
LIPID DROPLET DETECTION
- Minimum Lipid Area in Pixels 8
- Intensity Threshold Value 400
3) Metrics calculated from
NUCLEI IMAGES: Cell Count ("Count"), Nuclei Area ("Area_Nm"), Integrated Intensity of the Nuclei ("TiiNINm"), Average Intensity of the Nuclei ("ApiNiNm")
BODIPY IMAGES: Lipid Area Per Cell ("Area_Lm"), Integrated Intensity of Lipid Droplets Per Cell ("TiiLiLm")
4) The Integrated Intensity of the Lipid Droplets Per Cell , "TiiLiLm" metric, was used to calculate the dose response curves and parameters. IC50 values were calculated using CBIS software (ChemInnovations) employing a sigmoidal dose-response equation through non-linear regression. The other calculated metrics were used for quality control.
Comment
Compounds with an IC50_Mean < 5 uM are defined as actives in the dose response confirmation.

To simplify the distinction between the inactives of the primary screen and of the confirmatory screening stage, the Tiered Activity Scoring System was developed and implemented. Its utilization for the assay is described below.

Activity Scoring
Activity scoring rules were devised to take into consideration compound efficacy, its potential interference with the assay and the screening stage that the data was obtained. Details of the Scoring System will be published elsewhere. Briefly, the outline of the scoring system utilized for the assay is as follows:

1) First tier (0-40 range) is reserved for primary and single-concentration confirmation screening data is not applicable in this assay.

2) Second tier (41-80 range) is reserved for dose-response confirmation data.
a. Inactive compounds of the confirmatory stage are assigned a score value equal 41.
b. The score is linearly correlated with compound potency and, in addition, provides a measure of the likelihood that the compound is not an artifact based on the available information.
Score = 44 + 6*(pIC50 - 3)
where pIC50 is a negative log(10) of the IC50 value expressed in mole/L concentration units. This equation results in score values above 50 for compounds that demonstrate high potency and predictable behavior. Compounds with an IC50 <0.5 are assigned a score of 75. Compounds that are inactive in the assay or whose concentration-dependent behavior is likely to be an artifact of that assay will generally have lower score values.

3) Third tier (81-100 range) is reserved for resynthesized true positives and their analogues and is not applicable in this assay
Result Definitions
Show more
TIDNameDescriptionHistogramTypeUnit
OutcomeThe BioAssay activity outcomeOutcome
ScoreThe BioAssay activity ranking scoreInteger
1IC50_Mean_QualifierThis qualifier is to be used with the next TID, IC50_Mean. If qualifier is "=", the IC50 result equals the value in that column. If the qualifier is ">", the IC50 result is greater than that value. If the qualifier is "<", the IC50 result is smaller than that valueString
2IC50_Mean*IC50 value determined using sigmoidal dose response equationFloatμM
3IC50_Qualifier_1This qualifier is to be used with the next TID, IC50_1. If qualifier is "=", the IC50 result equals the value in that column. If the qualifier is ">", the IC50 result is greater than that value. If the qualifier is "<", the IC50 result is smaller than that valueString
4IC50_1IC50 value determined using sigmoidal dose response equationFloatμM
5Std.Err(IC50)_1Standard Error of IC50 valueFloatμM
6nH_1Hill coefficient determined using sigmoidal dose response equationFloat
7Excluded_Points_first_point_Range1Flags to indicate which of the first dose-response points were excluded from analysis. (1) means the titration point was excluded and (0) means the point was not excluded.String
8% Activity at 32 uM_first_point_Range1 (32μM**)% Inhibition at a given concentrationFloat%
9% Activity at 16 uM_first_point_Range1 (16μM**)% Inhibition at a given concentrationFloat%
10% Activity at 8 uM_first_point_Range1 (8μM**)% Inhibition at a given concentrationFloat%
11% Activity at 4 uM_first_point_Range1 (4μM**)% Inhibition at a given concentrationFloat%
12% Activity at 2 uM_first_point_Range1 (2μM**)% Inhibition at a given concentrationFloat%
13% Activity at 1 uM_first_point_Range1 (1μM**)% Inhibition at a given concentrationFloat%
14% Activity at 0.5 uM_first_point_Range1 (0.5μM**)% Inhibition at a given concentrationFloat%
15Excluded_Points_second_point_Range1Flags to indicate which of the second dose-response points were excluded from analysis. (1) means the titration point was excluded and (0) means the point was not excluded.String
16% Activity at 32 uM_second_point_Range1 (32μM**)% Inhibition at a given concentrationFloat%
17% Activity at 16 uM_second_point_Range1 (16μM**)% Inhibition at a given concentrationFloat%
18% Activity at 8 uM_second_point_Range1 (8μM**)% Inhibition at a given concentrationFloat%
19% Activity at 4 uM_second_point_Range1 (4μM**)% Inhibition at a given concentrationFloat%
20% Activity at 2 uM_second_point_Range1 (2μM**)% Inhibition at a given concentrationFloat%
21% Activity at 1 uM_second_point_Range1 (1μM**)% Inhibition at a given concentrationFloat%
22% Activity at 0.5 uM_second_point_Range1 (0.5μM**)% Inhibition at a given concentrationFloat%
23IC50_Qualifier_2This qualifier is to be used with the next TID, IC50_2. If qualifier is "=", the IC50 result equals the value in that column. If the qualifier is ">", the IC50 result is greater than that value. If the qualifier is "<", the IC50 result is smaller than that valueString
24IC50_2IC50 value determined using sigmoidal dose response equationFloatμM
25Std.Err(IC50)_2Standard Error of IC50 valueFloatμM
26nH_2Hill coefficient determined using sigmoidal dose response equationFloat
27Excluded_Points_third_point_Range1Flags to indicate which of the third dose-response points were excluded from analysis. (1) means the titration point was excluded and (0) means the point was not excluded.String
28% Activity at 32 uM_third_point_Range1 (32μM**)% Inhibition at a given concentrationFloat%
29% Activity at 16 uM_third_point_Range1 (16μM**)% Inhibition at a given concentrationFloat%
30% Activity at 8 uM_third_point_Range1 (8μM**)% Inhibition at a given concentrationFloat%
31% Activity at 4 uM_third_point_Range1 (4μM**)% Inhibition at a given concentrationFloat%
32% Activity at 2 uM_third_point_Range1 (2μM**)% Inhibition at a given concentrationFloat%
33% Activity at 1 uM_third_point_Range1 (1μM**)% Inhibition at a given concentrationFloat%
34% Activity at 0.5 uM_third_point_Range1 (0.5μM**)% Inhibition at a given concentrationFloat%
35Excluded_Points_fourth_point_Range1Flags to indicate which of the fourth dose-response points were excluded from analysis. (1) means the titration point was excluded and (0) means the point was not excluded.String
36% Activity at 32 uM_fourth_point_Range1 (32μM**)% Inhibition at a given concentrationFloat%
37% Activity at 16 uM_fourth_point_Range1 (16μM**)% Inhibition at a given concentrationFloat%
38% Activity at 8 uM_fourth_point_Range1 (8μM**)% Inhibition at a given concentrationFloat%
39% Activity at 4 uM_fourth_point_Range1 (4μM**)% Inhibition at a given concentrationFloat%
40% Activity at 2 uM_fourth_point_Range1 (2μM**)% Inhibition at a given concentrationFloat%
41% Activity at 1 uM_fourth_point_Range1 (1μM**)% Inhibition at a given concentrationFloat%
42% Activity at 0.5 uM_fourth_point_Range1 (0.5μM**)% Inhibition at a given concentrationFloat%
43IC50_Qualifier_3This qualifier is to be used with the next TID, IC50_3. If qualifier is "=", the IC50 result equals the value in that column. If the qualifier is ">", the IC50 result is greater than that value. If the qualifier is "<", the IC50 result is smaller than that valueString
44IC50_3IC50 value determined using sigmoidal dose response equationFloatμM
45Std.Err(IC50)_3Standard Error of IC50 valueFloatμM
46nH_3Hill coefficient determined using sigmoidal dose response equationFloat
47Excluded_Points_fifth_point_Range1Flags to indicate which of the fifth dose-response points were excluded from analysis. (1) means the titration point was excluded and (0) means the point was not excluded.String
48% Activity at 32 uM_fifth_point_Range1 (32μM**)% Inhibition at a given concentrationFloat%
49% Activity at 16 uM_fifth_point_Range1 (16μM**)% Inhibition at a given concentrationFloat%
50% Activity at 8 uM_fifth_point_Range1 (8μM**)% Inhibition at a given concentrationFloat%
51% Activity at 4 uM_fifth_point_Range1 (4μM**)% Inhibition at a given concentrationFloat%
52% Activity at 2 uM_fifth_point_Range1 (2μM**)% Inhibition at a given concentrationFloat%
53% Activity at 1 uM_fifth_point_Range1 (1μM**)% Inhibition at a given concentrationFloat%
54% Activity at 0.5 uM_fifth_point_Range1 (0.5μM**)% Inhibition at a given concentrationFloat%
55Excluded_Points_sixth_point_Range1Flags to indicate which of the sixth dose-response points were excluded from analysis. (1) means the titration point was excluded and (0) means the point was not excluded.String
56% Activity at 32 uM_sixth_point_Range1 (32μM**)% Inhibition at a given concentrationFloat%
57% Activity at 16 uM_sixth_point_Range1 (16μM**)% Inhibition at a given concentrationFloat%
58% Activity at 8 uM_sixth_point_Range1 (8μM**)% Inhibition at a given concentrationFloat%
59% Activity at 4 uM_sixth_point_Range1 (4μM**)% Inhibition at a given concentrationFloat%
60% Activity at 2 uM_sixth_point_Range1 (2μM**)% Inhibition at a given concentrationFloat%
61% Activity at 1 uM_sixth_point_Range1 (1μM**)% Inhibition at a given concentrationFloat%
62% Activity at 0.5 uM_sixth_point_Range1 (0.5μM**)% Inhibition at a given concentrationFloat%

* Activity Concentration. ** Test Concentration.
Additional Information
Grant Number: 1 R03 MH083261-01A1

Data Table (Concise)
Data Table ( Complete ):     View Active Data    View All Data
PageFrom: