p450-cyp1a2 - BioAssay Summary
The P450 gene superfamily is involved in metabolism and the clearance of xenobiotics. This assay used human CYP1A2 to measure the demethylation of luciferin 6' methyl ether (Luciferin-ME; Promega-Glo) to luciferin. The luciferin is then measured by luminescence after the addition of a luciferase detection regeant. Luciferin-ME concentration in the assay was equal to its Km for CYP1A2. ..more |
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Tested Compounds Tested Compounds Tested Substances Tested Substances Related BioAssays Related BioAssays |
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Target BioActive Compounds: 4175Depositor Specified Assays | AID | Name | Type | Comment |
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| 891 | qHTS Assay for Inhibitors and Substrates of Cytochrome P450 2D6 | confirmatory | |
| 883 | qHTS Assay for Inhibitors and Substrates of Cytochrome P450 2C9 | confirmatory | |
| 884 | qHTS Assay for Inhibitors and Substrates of Cytochrome P450 3A4 | confirmatory | |
| 899 | qHTS Assay for Inhibitors and Substrates of Cytochrome P450 2C19 | confirmatory | |
| 885 | qHTS Assay for Activators of Cytochrome P450 3A4 | confirmatory | |
Description: NCGC Assay Overview:
The P450 gene superfamily is involved in metabolism and the clearance of xenobiotics. This assay used human CYP1A2 to measure the demethylation of luciferin 6' methyl ether (Luciferin-ME; Promega-Glo) to luciferin. The luciferin is then measured by luminescence after the addition of a luciferase detection regeant. Luciferin-ME concentration in the assay was equal to its Km for CYP1A2. Protocol NCGC Assay Protocol Summary: Two uL of enzyme and substrate mix (final concentrations: 20nM CYP1A2, 100uM Luciferin-ME, 100mM KPO4) were dispensed into a white, solid bottom 1536-well microtiter plate. 23nL of compound was transferred by a pin tool. The plate was incubated at room temperature for 10 min. Two uL of an NADPH regeneration solution (Promega supplied reagent) was dispensed and the reaction was allowed to continue for 60 min at room temperature. Then the reaction was stopped by reconstituted detection reagent. After another 20 min of incubation the plate was read on the ViewLux (Perkin Elmer) at 60 sec exposure and 2x2 binning. This protocol was carried out with Promega-Glo reagents and further information can be found at http://www.promega.com/tbs/tb325/tb325.pdf. Data were normalized to the to AC100 inhibition (57 uM furafylline). Result Definitions | TID | Name | Description | | Histogram | Type | Unit |
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| Outcome | The BioAssay activity outcome | | | Outcome | |
| Score | The BioAssay activity ranking score | |  | Integer | |
| 1 | Activity Direction | Indicates direction of activity: inactive, decreasing, increasing. | | | String | |
| 2 | Activity Qualifier | Indicates if AC50 is "=" to value or if it is infinite activity (i.e, inactive), ">". | | | String | |
| 3 | Qualified AC50 | Qualified AC50; can be an IC50 or EC50. | |  | Float | |
| 4 | Log of AC50 | Log of AC50. | |  | Float | |
| 5 | Hill Coefficient | Hill slope of fitted curve. | |  | Float | |
| 6 | Curve R2 | R^2 fit value of curve. Closer to 1.0 equates to better Hill equation fit. | |  | Float | |
| 7 | Data Type | NCGC designation for data stage: 'qHTS', 'qHTS Verification', 'Secondary Profiling' | | | String | |
| 8 | Compound Type | NCGC designation for compound stage: 'NCGC Exploratory', 'NIHSMR', 'Compound Followup', 'Compound Verification', 'Probe Optimization' | | | String | |
| 9 | Compound QC | NCGC comment on compound QC: 'DPI QC', 'NCGC Purified' | | | String | |
| 10 | Data Analysis QC | NCGC comment on confidence of data: 'Curve Verfied', etc | | | String | |
| 11 | NCGC Comment | Annotation/notes on a particular compound's data: e.g, 'cytotoxic', 'fluorescent artifact' | | | String | |
| 12 | Curve Fit Model | Curve fitting model used. | | | String | |
| 13 | Hill S0 | S0 of Hill Equation | |  | Float | |
| 14 | Hill Sinf | Sinf of Hill Equation | |  | Float | |
| 15 | Hill dS | dS of Hill Equation | |  | Float | |
| 16 | Log AC50 Std Error | Standard error for Log AC50. | |  | Float | |
| 17 | Curve Chi2f | Sqrt(X^2/f) of curve where X^2 is chi-squared. Lower number is a better fit. | |  | Float | |
| 18 | Excluded Points | Individual points excluded from curve fitting. | | | String | |
| 19 | Number of Points | Number of valid points used for fitting. | |  | Integer | |
| 20 | Activity at 0.732nM | % Activity at given concentration. | |  | Float | % |
| 21 | Activity at 1.636nM | % Activity at given concentration. | |  | Float | % |
| 22 | Activity at 3.658nM | % Activity at given concentration. | |  | Float | % |
| 23 | Activity at 8.18nM | % Activity at given concentration. | |  | Float | % |
| 24 | Activity at 18.291nM | % Activity at given concentration. | |  | Float | % |
| 25 | Activity at 0.041uM | % Activity at given concentration. | |  | Float | % |
| 26 | Activity at 0.091uM | % Activity at given concentration. | |  | Float | % |
| 27 | Activity at 0.204uM | % Activity at given concentration. | |  | Float | % |
| 28 | Activity at 0.457uM | % Activity at given concentration. | |  | Float | % |
| 29 | Activity at 1.022uM | % Activity at given concentration. | |  | Float | % |
| 30 | Activity at 2.286uM | % Activity at given concentration. | |  | Float | % |
| 31 | Activity at 5.111uM | % Activity at given concentration. | |  | Float | % |
| 32 | Activity at 11.429uM | % Activity at given concentration. | |  | Float | % |
| 33 | Activity at 25.556uM | % Activity at given concentration. | |  | Float | % |
| 34 | Activity at 0.057mM | % Activity at given concentration. | |  | Float | % |
Data Table (Concise) Classification
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