High throughput discovery of novel modulators of ROMK K+ channel activity: Selectivity by Patch Clamp - BioAssay Summary
The Renal Outer Medullary Potassium channel (ROMK, Kir1.1) is expressed in the renal tubule where it critically regulates fluid and electrolyte homeostasis (Hebert, 2005). An emerging body of evidence suggests that ROMK could be a target for a novel class loop diuretic that lowers blood pressure while preserving plasma potassium levels (Ji, 2008). Furthermore, homozygous loss-of-function more .. |
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Depositor Specified Assays | AID | Name | Type | Comment |
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| 2753 | High throughput discovery of novel modulators of ROMK K+ channel activity: Dose-Response Assay | confirmatory | |
| 2436 | High-throughput Discovery of Novel Modulators of ROMK K+ Channel Activity | summary | |
Description: Assay Provider: Jerod Denton Assay Provider Affiliation: Vanderbilt University Grant Title: High throughput discovery of novel modulators of ROMK K+ channel activity Grant Number: R21 NS057041-01
The Renal Outer Medullary Potassium channel (ROMK, Kir1.1) is expressed in the renal tubule where it critically regulates fluid and electrolyte homeostasis (Hebert, 2005). An emerging body of evidence suggests that ROMK could be a target for a novel class loop diuretic that lowers blood pressure while preserving plasma potassium levels (Ji, 2008). Furthermore, homozygous loss-of-function mutations in the gene encoding ROMK (KCNJ1) cause antenatal Bartter syndrome, a severe salt and water wasting disease in infants (Simon, 1996). ROMK is thus an important pharmacological target for the management of disease. Its actual therapeutic value and drugability, however, are unknown due to the lack of small-molecule probes targeting the channel. The discovery of ROMK modulators will provide important new tools for studying the structure, function and therapeutic potential of ROMK and other inward rectifying potassium channels. Protocol The purpose of this assay was to use patch-clamp electrophysiology to test lead compounds for inhibition of potassium inward rectifier (KIR) family members (ROMK/KIR1.1, KIR2.1, KIR2.3, KIR4.1, and KIR7.1).
Experiments were done as previously described (Lewis, 2009). Cells containing ROMK/KIR1.1 were cultured in the presence of Tet the night before patch clamp experiments and HEK-293 cells were transiently transfected with 0.5-1.0 ug of channel expression vector and 0.5 ug of pcDNA3.1-EGFP (transfection marker). Experiments were performed approximately 24 h post-transfection by rinsing the cells with divalent-free buffer (145 mM NaCl, 5 mM KCl, 4 mM NaHCO3, 0.3 mM Na2HP04, 0.3 mM KH2PO4, 5.6 mM D-glucose, pH 7.4, 290 mOsm), dissociating by brief exposure to 0.25% Trypsin containing 1 mM EDTA, plating on poly-L-lysine-coated round glass coverslips and allowing to recover at 37 degrees C in a 5% CO2 incubator for at least 1 h. The coverslips were moved to a small-volume perfusion chamber (Warner Instruments, Hamden, CT) and mounted on the stage of a Nikon Eclipse TE2000-U inverted microscope. Patch electrodes were pulled from silanized 1.5 mm outer diameter borosilicate microhematocrit tubes with a Narishige PP-830 two-stage puller. Electrode resistance ranged from 2.5 to 3.5 MOhm when filled with the following intracellular solution (in mM) 135 KCl, 2 MgCl2, 1 EGTA, 10 HEPES free acid, 2 Na2ATP (Roche, Indianapolis, IN), pH 7.3, 275 mOsm. The standard bath solution contained (in mM): 135 NaCl, 5 KCl, 2 CaCl2, 1 MgCl2, 5 glucose, 10 HEPES free acid, pH 7.4, 290 mOsm. Whole-cell currents were recorded under voltage-clamp conditions using an Axopatch 200B amplifier (Molecular Devices, Sunnyvale, CA). The cell membrane potential was recorded in current clamp mode. Electrical connections to the amplifier were made using Ag/AgCl wires and 3 M KCl/agar bridges. Electrophysiological data were collected at 5 kHz and filtered at 1 kHz. Data acquisition and analysis were performed using pClamp 9.2 software (Axon Instruments).
Result Definitions | TID | Name | Description | | Histogram | Type | Unit |
|---|
| Outcome | The BioAssay activity outcome | | | Outcome | |
| Score | The BioAssay activity ranking score | |  | Integer | |
| 1 | ROMK 1 % Block | % Inhibition at 120mV for ROMK treated with 1uM of compound | |  | Float | |
| 2 | ROMK 1 SEM | Standard Error of Measure for % Inhibition at 120mV for ROMK treated with 1uM of compound | |  | Float | |
| 3 | ROMK 1 N | Number of replicates for % Inhibition at 120mV for ROMK treated with 1uM of compound | |  | Float | |
| 4 | ROMK 1 p | p value for % Inhibition at 120mV for ROMK treated with 1uM of compound | | | String | |
| 5 | ROMK 3 % Block | % Inhibition at 120mV for ROMK treated with 3uM of compound | |  | Float | |
| 6 | ROMK 3 SEM | Standard Error of Measure for % Inhibition at 120mV for ROMK treated with 3uM of compound | |  | Float | |
| 7 | ROMK 3 N | Number of replicates for % Inhibition at 120mV for ROMK treated with 3uM of compound | |  | Float | |
| 8 | ROMK 3 p | p value for % Inhibition at 120mV for ROMK treated with 3uM of compound | | | String | |
| 9 | ROMK 10 % Block | % Inhibition at 120mV for ROMK treated with 10uM of compound | |  | Float | |
| 10 | ROMK 10 SEM | Standard Error of Measure for % Inhibition at 120mV for ROMK treated with 10uM of compound | |  | Float | |
| 11 | ROMK 10 N | Number of replicates for % Inhibition at 120mV for ROMK treated with 10uM of compound | |  | Float | |
| 12 | ROMK 10 p | p value for % Inhibition at 120mV for ROMK treated with 10uM of compound | | | String | |
| 13 | ROMK Ba % Block | % Inhibition at 120mV for ROMK treated with 2mM of barium | |  | Float | |
| 14 | ROMK Ba SEM | Standard Error of Measure for % Inhibition at 120mV for ROMK treated with 2mM of barium | |  | Float | |
| 15 | ROMK Ba N | Number of replicates for % Inhibition at 120mV for ROMK treated with 2mM of barium | |  | Float | |
| 16 | ROMK Ba p | p value for % Inhibition at 120mV for ROMK treated with 2mM of barium | | | String | |
| 17 | Kir2.1 % Block | % Inhibition at 120mV for Kir2.1 treated with 10uM of compound | |  | Float | |
| 18 | Kir2.1 SEM | Standard Error of Measure for % Inhibition at 120mV for Kir2.1 treated with 10uM of compound | |  | Float | |
| 19 | Kir2.1 N | Number of replicates for % Inhibition at 120mV for Kir2.1 treated with 10uM of compound | |  | Float | |
| 20 | Kir2.1 p | p value for % Inhibition at 120mV for Kir2.1 treated with 10uM of compound | | | String | |
| 21 | Kir2.1 Ba % Block | % Inhibition at 120mV for Kir2.1 treated with 2mM of barium | |  | Float | |
| 22 | Kir2.1 Ba SEM | Standard Error of Measure for % Inhibition at 120mV for Kir2.1 treated with 2mM of barium | |  | Float | |
| 23 | Kir2.1 Ba N | Number of replicates for % Inhibition at 120mV for Kir2.1 treated with 2mM of barium | |  | Float | |
| 24 | Kir2.1 Ba p | p value for % Inhibition at 120mV for Kir2.1 treated with 2mM of barium | | | String | |
| 25 | Kir4.1 % Block | % Inhibition at 120mV for Kir4.1 treated with 10uM of compound | |  | Float | |
| 26 | Kir4.1 SEM | Standard Error of Measure for % Inhibition at 120mV for Kir4.1 treated with 10uM of compound | |  | Float | |
| 27 | Kir4.1 N | Number of replicates for % Inhibition at 120mV for Kir4.1 treated with 10uM of compound | |  | Float | |
| 28 | Kir4.1 p | p value for % Inhibition at 120mV for Kir4.1 treated with 10uM of compound | | | String | |
| 29 | Kir4.1 Ba % Block | % Inhibition at 120mV for Kir4.1 treated with 2mM of barium | |  | Float | |
| 30 | Kir4.1 Ba SEM | Standard Error of Measure for % Inhibition at 120mV for Kir4.1 treated with 2mM of barium | |  | Float | |
| 31 | Kir4.1 Ba N | Number of replicates for % Inhibition at 120mV for Kir4.1 treated with 2mM of barium | |  | Float | |
| 32 | Kir4.1 Ba p | p value for % Inhibition at 120mV for Kir4.1 treated with 2mM of barium | | | String | |
| 33 | Kir7.1 % Block | % Inhibition at 120mV for Kir7.1 treated with 10uM of compound | |  | Float | |
| 34 | Kir7.1 SEM | Standard Error of Measure for % Inhibition at 120mV for Kir7.1 treated with 10uM of compound | |  | Float | |
| 35 | Kir7.1 N | Number of replicates for % Inhibition at 120mV for Kir7.1 treated with 10uM of compound | |  | Float | |
| 36 | Kir7.1 p | p value for % Inhibition at 120mV for Kir7.1 treated with 10uM of compound | | | String | |
| 37 | Kir7.1 Ba % Block | % Inhibition at 120mV for Kir7.1 treated with 2mM of barium | |  | Float | |
| 38 | Kir7.1 Ba SEM | Standard Error of Measure for % Inhibition at 120mV for Kir7.1 treated with 2mM of barium | |  | Float | |
| 39 | Kir7.1 Ba N | Number of replicates for % Inhibition at 120mV for Kir7.1 treated with 2mM of barium | |  | Float | |
| 40 | Kir7.1 Ba p | p value for % Inhibition at 120mV for Kir7.1 treated with 2mM of barium | | | String | |
| 41 | Kir2.3 % BLOCK | % Inhibition at 120mV for Kir2.3 treated with 10uM of compound | |  | Float | |
| 42 | Kir2.3 Ba % BLOCK | % Inhibition at 120mV for Kir2.3 treated with 2mM of barium | |  | Float | |
| 43 | Kir2.3 SEM | Standard Error of Measure for % Inhibition at 120mV for Kir2.3 treated with 10uM compound | |  | Float | |
| 44 | Kir2.3 Ba SEM | Standard Error of Measure for % Inhibition at 120mV for Kir2.3 treated with 2mM of barium | |  | Float | |
| 45 | Kir2.3 N | Number of replicates for % Inhibition at 120mV for Kir2.3 treated with 2mM of barium | |  | Integer | |
| 46 | Kir2.3 Ba N | Number of replicates for % Inhibition at 120mV for Kir2.3 treated with 2mM of barium | |  | Integer | |
| 47 | ROMK_geneID† | KCNJ1, potassium inwardly-rectifying channel, subfamily J, member 1 | | | String | |
| 48 | Kir2.1_geneID† | KCNJ2, potassium inwardly-rectifying channel, subfamily J, member 2 | | | String | |
| 49 | Kir2.3_geneID† | KCNJ4, potassium inwardly-rectifying channel, subfamily J, member 4 | | | String | |
| 50 | Kir4.1_geneID† | KCNJ10, potassium inwardly-rectifying channel, subfamily J, member 10 | | | String | |
| 51 | Kir7.1_geneID† | KCNJ13, potassium inwardly-rectifying channel, subfamily J, member 13 | | | String | |
† RNAi Target. Additional Information Grant Number: R21 NS057041-01
Data Table (Concise)
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