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BioAssay: AID 1263

Confirmation cell-based high throughput screening assay to measure STAT1 inhibition

The signal transducer and activator of transcription (STAT) family of transcription factors transduce signals from a variety of extracellular stimuli and are important mediators of inflammation, cell survival, differentiation, and proliferation (1, 2). STATs are activated in response to growth factors, cytokines, and G-CSF binding to cell surface receptor tyrosine kinases (1-3). In resting cells more ..
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 Tested Compounds
 Tested Compounds
All(199)
 
 
Active(109)
 
 
Inactive(90)
 
 
 Tested Substances
 Tested Substances
All(199)
 
 
Active(109)
 
 
Inactive(90)
 
 
AID: 1263
Data Source: The Scripps Research Institute Molecular Screening Center (STAT1_INH_LUMI_1536_3X%INH)
BioAssay Type: Primary, Primary Screening, Single Concentration Activity Observed
Depositor Category: NIH Molecular Libraries Screening Center Network
BioAssay Version:
Deposit Date: 2008-05-05
Modify Date: 2008-09-15

Data Table ( Complete ):           View Active Data    View All Data
Target
BioActive Compounds: 109
Related Experiments
Show more
AIDNameTypeComment
862Primary cell-based high throughput screening assay to measure STAT3 inhibitionScreeningdepositor-specified cross reference
920Primary cell-based high throughput screening assay to measure STAT1 inhibitionScreeningdepositor-specified cross reference
1396Dose response cell-based assay to measure STAT1 inhibitionConfirmatorydepositor-specified cross reference
1409Dose response counterscreen for STAT1 inhibitors: cell-based high throughput assay to measure STAT3 inhibitionConfirmatorydepositor-specified cross reference
1803Summary of probe development efforts to identify inhibitors of signal transducer and activator of transcription 1 (STAT1)Summarydepositor-specified cross reference
2771Late stage counterscreen results from the probe development effort to identify STAT1 inhibitors: luminescence-based cell-based dose response assay for STAT3 inhibitorsConfirmatorydepositor-specified cross reference
2772Late stage results from the probe development effort to identify STAT1 inhibitors: luminescence-based cell-based dose response assay for STAT1 inhibitorsConfirmatorydepositor-specified cross reference
449758Late stage assay provider counterscreen results from the probe development effort to identify STAT1 inhibitors: fluorescence-based cell-based quantitative PCR assay to identify inhibitors of IRF-1 gene expressionOtherdepositor-specified cross reference
1303Counterscreen assay for STAT1 inhibitors: Cell-based high throughput assay to measure NF-kappaB inhibitionScreeningsame project related to Summary assay
1310Counterscreen assay for STAT1 inhibitors: Cell-based high throughput assay to measure STAT3 inhibitionScreeningsame project related to Summary assay
Description:
Source (MLSCN Center Name): The Scripps Research Institute Molecular Screening Center
Center Affiliation: The Scripps Research Institute (TSRI)
Assay Provider: David Frank
Network: Molecular Library Screening Center Network (MLSCN)
Grant Proposal Number: 1 X01 MH079826-01
Grant Proposal PI: David Frank

External Assay ID: STAT1_INH_LUMI_1536_3X%INH

Name:Confirmation cell-based high throughput screening assay to measure STAT1 inhibition

Description:

The signal transducer and activator of transcription (STAT) family of transcription factors transduce signals from a variety of extracellular stimuli and are important mediators of inflammation, cell survival, differentiation, and proliferation (1, 2). STATs are activated in response to growth factors, cytokines, and G-CSF binding to cell surface receptor tyrosine kinases (1-3). In resting cells STATs are inactive in the cytoplasm. In response to stimuli, STATs are phosphorylated by the Janus-activated kinases (Jaks), which induces STAT dimerization and nuclear translocation, where STATs bind to specific enhancer elements in target genes (2). Although structurally similar, members of the STAT family (STATs 1, 2, 3, 4, 5a, 5b, and 6) possess diverse biological roles (2). For example, STAT1 activation is pro-inflammatory and anti-proliferative, while STAT3 activation is anti-inflammatory and pro-apoptotic (2). STAT1 is largely responsible for mediating the effects of IFN-gamma, while STAT3 is predominantly involved in IL-6 signaling (4). STAT1 induces expression of genes that inhibit the cell cycle, and thus STAT1 is considered to have tumor suppressor properties (5). Currently available STAT1 modulators mediate modest effects on STAT-induced transcription, act indirectly by targeting JAK or other kinases activities, or are associated with adverse hematologic or gastrointestinal side effects (6, 7). The liabilities of the current state of the art for STAT1 modulators necessitate the discovery of higher affinity probes. Due to the diverse roles and potent phenotypes associated with STAT signaling, the identification of selective modulators of STAT1 activity may lead to pharmacological tools for cancer, wound healing, and inflammatory diseases.

References:

1. Alvarez JV, Febbo PG, Ramaswamy S, Loda M, Richardson A, Frank DA. Identification of a genetic signature of activated signal transducer and activator of transcription 3 in human tumors. Cancer Res. 2005 Jun 15;65(12):5054-62.
2. Schindler C, Levy DE, Decker T. JAK-STAT signaling: from interferons to cytokines. J Biol Chem. 2007 Jul 13;282(28):20059-63.
3. Germain D, Frank DA. Targeting the cytoplasmic and nuclear functions of signal transducers and activators of transcription 3 for cancer therapy. Clin Cancer Res. 2007 Oct 1;13(19):5665-9.
4. Levy DE, Darnell JE Jr. Stats: transcriptional control and biological impact. Nat Rev Mol Cell Biol. 2002 Sep;3(9):651-62.
5. Battle TE, Wierda WG, Rassenti LZ, Zahrieh D, Neuberg D, Kipps TJ, Frank DA. In vivo activation of signal transducer and activator of transcription 1 after CD154 gene therapy for chronic lymphocytic leukemia is associated with clinical and immunologic response. Clin Cancer Res. 2003 Jun;9(6):2166-72.
6. Lynch RA, Etchin J, Battle TE, Frank DA. A small-molecule enhancer of signal transducer and activator of transcription 1 transcriptional activity accentuates the antiproliferative effects of IFN-gamma in human cancer cells. Cancer Res. 2007 Feb 1;67(3):1254-61.
7. Johnson S, Smith AG, Loffler H, Osby E, Juliusson G, Emmerich B, Wyld PJ, Hiddemann W. Multicentre prospective randomised trial of fludarabine versus cyclophosphamide, doxorubicin, and prednisone (CAP) for treatment of advanced-stage chronic lymphocytic leukaemia. The French Cooperative Group on CLL. Lancet. 1996 May 25;347(9013):1432-8.

Keywords:

STAT1, signal transducer and activator of transcription 1, transcription factor, Scripps, Scripps Florida, Molecular Library Screening Center Network, MLSCN, HTS, assay, inhibition, antagonist, confirmatory, confirmatory screen, luciferase, luminescence, reporter, 1536.
Protocol
Assay Overview:
The purpose of this assay is to confirm activity of a subset of compounds that were identified as active in a previous set of experiments entitled, "Primary cell-based high throughput screening assay to measure STAT1 inhibition" (PubChem AID 920). The compounds selected for testing in this AID met at least the two following criteria: 1) they were declared active in AID 920; 2) they were declared inactive in a previous set of experiments entitled, "Primary cell-based high throughput screening assay to measure STAT3 inhibition" (PubChem AID 862).
In this assay inhibition of STAT1 activity was measured using a murine NIH 3T3 fibroblast cell line cell line that stably expresses a STAT1::luciferase construct. Test compounds were screened for their ability to prevent or reduce IFN-gamma-mediated STAT1::luciferase reporter activity. Cells were exposed to test compounds followed by treatment with IFN-gamma. Changes in STAT1::luciferase activity were monitored by measuring luminescence. As designed, a STAT1 antagonist will block IFN-gamma-mediated STAT1 transcription, thus preventing or reducing the activation of the luciferase reporter gene, and decreasing luminescence.
Protocol Summary:
The STAT1 antagonist and potentiator confirmation assays were run simultaneously. NIH 3T3 cells were grown in T-175 flasks in Dulbecco's Modified Eagle's Media (DMEM) supplemented with 10% v/v fetal bovine serum and antibiotics (50 ug/mL each of penicillin and streptomycin) at 37 degrees C in an atmosphere of 5% CO2 and 95% relative humidity (RH).
Prior to the start of the assay, cells were resuspended at a density of 1.88 million cells/mL in phenol red-free growth medium, and filtered through a 0.7 micron filter. Next, 4 ul of well-mixed cell suspension (7,520 cells per well) were dispensed into each well of 1536-well plates. The assay was started by immediately dispensing 28 nL of test compound (5.7 uM final nominal concentration) in DMSO to sample wells, while High Control wells received nifuroxazide (final nominal IC100 concentration of 300 uM, set as 100% inhibition) in DMSO, and Low Control wells received DMSO alone (0.6% final concentration). The plates were then incubated for 1 hour at 37 degrees C (5% CO2, 95% RH). Next, 1 ul of human recombinant IFN-gamma (final nominal EC80 concentration of 3.0 ng/mL, set as 100% activation) was dispensed into sample and all control wells. Plates were then incubated for 4 hours at 37 degrees C (5% CO2, 95% RH). The assay was stopped by dispensing 5 ul of SteadyLite HTS luciferase substrate at room temperature to each well, followed by incubation at room temperature for 15 minutes. Luminescence was measured on the ViewLux plate reader.
The percent inhibition was defined using the following mathematical formula:
% Inhibition = 100*[1 - ((Test_Compound - Median_High_Control) / (Median_Low_Control - Median_High_Control))]
Where:
Test_Compound is defined as the luminescence value of IFN-gamma-treated wells containing test compound.
Median_High_Control is defined as the median luminescence of IFN-gamma-treated control wells containing nifuroxazide.
Median_Low_Control is defined as the median luminescence of IFN-gamma-treated control wells containing DMSO.
Test compounds were assayed in triplicate at a single concentration of 5.7 uM. Any compound that exhibited a percent inhibition greater than the hit cutoff calculated for the Primary screen was declared active. The reported Pubchem_Activity_Score has been normalized to 100% of the highest observed inhibition. Negative % inhibition values were assigned an activity score zero.
List of Reagents:
Dulbecco's Modified Eagle's Media I (Invitrogen, part 11965-092)
Dulbecco's Modified Eagle's Media, no Phenol Red (Invitrogen, part 21063-029)
Fetal Bovine Serum (Hyclone, part SH30088-03)
100X Penicillin-Streptomycin-Neomycin mix (Invitrogen, part 15640-055).
Recombinant human IFN-gamma (R&D Systems, part 485-MI)
Nifuroxazide (Sigma-Aldrich, part N 2641)
SteadyLite HTS Assay Kit (PerkinElmer, part 6016989)
T175 Flasks (Corning, part 431080)
1536-well plates (Greiner, part 789173)
Comment
Due to the increasing size of the MLSCN compound library, this assay may have been run as two or more separate campaigns, each campaign testing a unique set of compounds. In this case the results of each separate campaign were assigned "Active/Inactive" status based upon the associated Primary uHTS campaign's specific compound activity cutoff value. All data were normalized on a per-plate basis. Each plate was normalized using same plate controls. Possible artifacts of this assay can include, but are not limited to dust or lint located in or on wells of the plate, compounds that non-specifically modulate STAT1 or luciferase activity, and compounds that quench or enhance luminescence within the well. All test compound concentrations reported are nominal; the specific test concentration for a particular compound may vary based upon the actual sample provided by the MLSMR. The MLSMR was not able to provide all compounds selected for testing in this AID.
The inactive compounds of this assay have activity score range of 0 to 34 and active compounds range of activity score is 35 to 100.
Categorized Comment - additional comments and annotations
From PubChem:
Assay Format: Cell-based
Assay Cell Type: NIH 3T3
Result Definitions
TIDNameDescriptionHistogramTypeUnit
OutcomeThe BioAssay activity outcomeOutcome
ScoreThe BioAssay activity ranking scoreInteger
1Inhibition (5.5μM**)Normalized percent inhibition of the primary screen at a compound concentration of 5.5 micromolar.Float%
2Standard DeviationStandard deviation of the confirmation screen derived from the normalized percent inhibition of the triplicate data for each compound.Float

** Test Concentration.

Data Table (Concise)
Data Table ( Complete ):     View Active Data    View All Data
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