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BioAssay: AID 1045

High Throughput Screen to Identify Compounds that Suppress the Growth of Human Colon Tumor Cells Lacking Oncogenic Beta Catenin Expression - Dose Response

Numerous genes have been identified which participate, either through activation (oncogenes) or inactivation (tumor suppressors), in the multifactorial process of carcinogenesis (Vogelstein B and Kinzler KW, 2004). Beta catenin is one of the most important cancer-related genes currently known. Activating mutations of Beta catenin are found in approximately 10-20% of all human tumors (Arce L, et. more ..
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 Tested Compounds
 Tested Compounds
All(1514)
 
 
Active(1370)
 
 
Inactive(144)
 
 
 Tested Substances
 Tested Substances
All(1515)
 
 
Active(1371)
 
 
Inactive(144)
 
 
 Related BioAssays
 Related BioAssays
AID: 1045
Data Source: SRMLSC (BCat DR)
BioAssay Type: Confirmatory, Concentration-Response Relationship Observed
Depositor Category: NIH Molecular Libraries Screening Center Network
BioAssay Version:
Deposit Date: 2008-02-15
Modify Date: 2010-06-28

Data Table ( Complete ):           View Active Data    View All Data
BioActive Compounds: 1370
Related Experiments
AIDNameTypeComment
818High Throughput Screen to Identify Compounds that Suppress the Growth of Human Colon Tumor Cells Lacking Oncogenic Beta Catenin ExpressionScreeningdepositor-specified cross reference
823High Throughput Screen to Identify Compounds that Suppress the Growth of Human Colon Tumor Cells Lacking Oncogenic Beta Catenin Expression - Pilot ScreenScreeningdepositor-specified cross reference
824High Throughput Screen to Identify Compounds that Suppress the Growth of Cells with a Deletion of the PTEN Tumor Suppressor - Pilot ScreenScreeningdepositor-specified cross reference
827High Throughput Screen to Identify Compounds that Suppress the Growth of Cells with a Deletion of the PTEN Tumor SuppressorScreeningdepositor-specified cross reference
999A Validation Screen to Identify Compounds that Suppress the Growth of Cells with a Deletion of the PTEN Tumor Suppressor Using a Diverse Compound SetScreeningdepositor-specified cross reference
1004A Validation Screen to Identify Compounds that Suppress the Growth of Human Colon Tumor Cells Lacking Oncogenic Beta Catenin Expression Using a Diverse Compound SetScreeningdepositor-specified cross reference
1047High Throughput Screen to Identify Compounds that Suppress the Growth of Cells with a Deletion of the PTEN Tumor Suppressor - Dose ResponseConfirmatorydepositor-specified cross reference
Description:
Southern Research Molecular Libraries Screening Center (SRMLSC)
Southern Research Institute (Birmingham, Alabama)
NIH Molecular Libraries Screening Centers Network (MLSCN)
Submitted by Dr. Todd Waldman (Lombardi Cancer Center, Georgetown University School of Medicine)
Award: R03-NS053741

Numerous genes have been identified which participate, either through activation (oncogenes) or inactivation (tumor suppressors), in the multifactorial process of carcinogenesis (Vogelstein B and Kinzler KW, 2004). Beta catenin is one of the most important cancer-related genes currently known. Activating mutations of Beta catenin are found in approximately 10-20% of all human tumors (Arce L, et. al. 2006). Beta catenin modulates signaling by the Wnt signaling pathway, which is well known to be activated by numerous mechanisms during carcinogenesis. Therefore, by screening against this target there is the potential to identify pathway modulators that could potentially have efficacy against a wide range of common human tumors.

Beta catenin is the critical intracellular signaling molecule for the Wnt signaling pathway and binds to TCF1-4 in the nucleus to serve as a transcriptional co-activator. Several groups have attempted to identify inhibitors of the interaction between Beta catenin and TCF1-4 (example in Lepourcelet M, et. al. 2004). However, since oncogenic Beta catenin is not required for the growth of human HCT116 colon tumor cells, we did not expect to identify inhibitors of TCF1-4 in the present assay (Kim JS et. al. 2002). Instead, we would expect to identify other types of compounds that specifically target cells lacking oncogenic Beta catenin. At the time of this screen, no such compounds have yet been reported in the literature.

The goal of this dose response study was to confirm the activity of compounds identified in a screen to identify pharmacological probes of the Wnt pathway (AID818, AID823, AID1004). The present study and the primary single dose screen used the HCT116 clonal cell line which has a targeted integration of a plasmid into the oncogenic Beta catenin locus (knockout) (Kim et. al. 2002). In a companion screen (AID824, AID827, AID999), a different HCT116 clonal cell line has a targeted integration of a plasmid into both PTEN loci, while retaining the oncogenic Beta catenin (Lee et al, 2004). As such, each cell line serves as the clonal control for the other.

In the present assay, we treated HCT116 Beta catenin "knockout" colon tumor cells with library compounds for 60 h over a 10 point 2-fold dilution series, ranging from 0.059 uM to 30 uM. Following 60 hours of treatment, relative viable cell number was determined using a commercially available assay (Cell Titer Glo, Promega). Each plate contained 32 replicates of vehicle treated cells which served as negative controls, and 32 replicates treated with Hyamine 1622 (100 micromolar), which served as positive controls.
Protocol
Cell Culture: HCT116 cells lacking activated Beta Catenin were subcultured every 3-4 days in McCoy's 5A medium with 10% fetal bovine serum, 100 U/mL penicillin, 100 ug/mL streptomycin and 2 mM glutamine (complete growth medium), incubated at 37 degrees C in 5% carbon dioxide, and maintained at sub-confluent density for no more than 20 passages.

Compound Dosing/Plating: Carrier or Hyamine 1622 (Benzethonium chloride, Sigma-Aldrich) were diluted in complete growth medium to prepare a 5X concentrated dosing solution (100 uM Hyamine/1.5% DMSO) which was dispensed into 384-well black clear-bottom tissue culture treated plates (5 uL volume). This resulted in a final culture volume in assay plates of 25 uL, with final concentrations of 20 uM Hyamine and 0.3% DMSO for the library compounds and controls.

Cell Plating: Twenty uL of complete growth medium containing 1250 cells were dispensed per well, while stirring. Plates were incubated at room temperature for 30 min prior to incubation at 37 degrees C in 5% carbon dioxide for 60 h.

Endpoint/Detection: At the end of the treatment period, assay plates were removed from the incubator and equilibrated to room temperature 10 min. Twenty five uL of Cell Titer Glo reagent was added and plates were incubated for an additional 10 min in the dark. At the end of the incubation, assay plates were analyzed using a PerkinElmer Envision microplate reader with an integration time of 0.1 s in luminescence mode.

Data Analysis: Thirty-two control wells containing cells treated with DMSO vehicle and 32 wells containing Hyamine 1622 were included on each assay plate to calculate Z value for each plate and to normalize the data on a per plate basis. Z values ranged from 0.76 to 0.87 with a mean of 0.82. Compound data was normalized and reported as % viability which was calculated using the following formula: % viability = 100*(Cmpd Lum-Med Ctrl Drug)/(Med Cell Ctrl - Med Ctrl Drug). The normalized % viability was plotted against the tested concentrations of 0.059 to 30 uM. The EC50 values were calculated using XLfit formula 205, a 4 parameter Levenburg-Marquardt algorithm allowing extrapolation to identify weakly active compounds.
Comment
Possible artifacts in this assay include, but are not limited to, compounds that interfere with the luciferase reaction, absorb luminescence, or precipitate.


Outcome:
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Compounds that returned EC50 values were considered active within the context of this assay, although compounds with EC50 values greater than 100 were considered to be weak actives.

Score: In this confirmatory dose response screen, active compounds were scored on a scale of 41-80 using an inverse linear correlation to EC50 values between 0 and 100 uM. Compounds that were not confirmed as active in the dose response screen were given the score 0. In later stage probe development screening, active resynthesized confirmatory screen compounds and active analogues thereof will score in a range of 81-100.
Result Definitions
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TIDNameDescriptionHistogramTypeUnit
OutcomeThe BioAssay activity outcomeOutcome
ScoreThe BioAssay activity ranking scoreInteger
1EC50 ModifierString
2EC50*FloatμM
3Hill Slope ModifierString
4Hill SlopeFloat
5EC50 Normalized Chi2Float
6EC50 Std Dev ModifierString
7EC50 Std DevFloat
8EC50 MinMinimum parameter used in 4-parameter curve fitting.Float
9EC50 MaxMaximum parameter used in 4-parameter curve fitting.Float
10Max ViabilityMaximum Viability observed in concentration response testFloat%
11Max ConcConcentration at which Max Viability was observedFloatμM
12Min ViabilityMinimum Viability observed in concentration response testFloat%
13Min ConcConcentration at which Min Viability was observedFloatμM
14Viability @ 30 uM (30μM**)Float%
15Viability @ 15 uM (15μM**)Float%
16Viability @ 7.5uM (7.5μM**)Float%
17Viability @ 3.75 uM (3.75μM**)Float%
18Viability @ 1.875 uM (1.875μM**)Float%
19Viability @ 0.938 uM (0.938μM**)Float%
20Viability @ 0.469 uM (0.469μM**)Float%
21Viability @ 0.234 uM (0.234μM**)Float%
22Viability @ 0.117 uM (0.117μM**)Float%
23Viability @ 0.059 uM (0.059μM**)Float%

* Activity Concentration. ** Test Concentration.

Data Table (Concise)
Data Table ( Complete ):     View Active Data    View All Data
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